Back to Long Tests report for BioC 3.24

This page was generated on 2026-05-14 12:59 -0400 (Thu, 14 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4890
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 14/26HostnameOS / ArchCHECK
EpiMix 1.15.0  (landing page)
Yuanning Zheng
Snapshot Date: 2026-05-09 09:55 -0400 (Sat, 09 May 2026)
git_url: https://git.bioconductor.org/packages/EpiMix
git_branch: devel
git_last_commit: 11cb6d5
git_last_commit_date: 2026-04-28 08:58:39 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  ERROR  

CHECK results for EpiMix on nebbiolo2

To the developers/maintainers of the EpiMix package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EpiMix
Version: 1.15.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no EpiMix_1.15.0.tar.gz
StartedAt: 2026-05-09 16:11:40 -0400 (Sat, 09 May 2026)
EndedAt: 2026-05-09 16:11:45 -0400 (Sat, 09 May 2026)
EllapsedTime: 5.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: EpiMix.Rcheck
Warnings: NA

Tests output


'R CMD check' output

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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no EpiMix_1.15.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.24-bioc-longtests/meat/EpiMix.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-09 20:11:40 UTC
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘EpiMix/DESCRIPTION’ ... OK
* this is package ‘EpiMix’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘karyoploteR’

Imports includes 30 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.24-bioc-longtests/meat/EpiMix.Rcheck/00check.log’
for details.

Installation output