| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-05 11:33 -0400 (Tue, 05 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4844 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2108/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| splicelogic 1.1.0 (landing page) Beatriz Campillo
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for splicelogic in R Universe. | ||||||||||||||
|
To the developers/maintainers of the splicelogic package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/splicelogic.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: splicelogic |
| Version: 1.1.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 splicelogic |
| StartedAt: 2026-05-04 20:22:30 -0400 (Mon, 04 May 2026) |
| EndedAt: 2026-05-04 20:23:00 -0400 (Mon, 04 May 2026) |
| EllapsedTime: 30.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 splicelogic
###
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* checking for file ‘splicelogic/DESCRIPTION’ ... OK
* preparing ‘splicelogic’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘splicelogic.Rmd’ using rmarkdown
Quitting from splicelogic.Rmd:435-447 [get-txps]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unable to open database file
---
Backtrace:
▆
1. ├─dplyr::filter(...)
2. ├─dplyr::select(...)
3. ├─tibble::as_tibble(...)
4. ├─AnnotationDbi::select(...)
5. └─AnnotationDbi::select(...)
6. └─GenomicFeatures:::.select(x, keys, columns, keytype, ...)
7. └─AnnotationDbi:::dbQuery(dbconn(x), sql)
8. ├─DBI::dbGetQuery(conn, SQL)
9. └─DBI::dbGetQuery(conn, SQL)
10. └─DBI (local) .local(conn, statement, ...)
11. ├─DBI::dbSendQuery(conn, statement, ...)
12. └─RSQLite::dbSendQuery(conn, statement, ...)
13. └─RSQLite (local) .local(conn, statement, ...)
14. ├─methods::new(...)
15. │ ├─methods::initialize(value, ...)
16. │ └─methods::initialize(value, ...)
17. └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'splicelogic.Rmd' failed with diagnostics:
unable to open database file
--- failed re-building ‘splicelogic.Rmd’
SUMMARY: processing the following file failed:
‘splicelogic.Rmd’
Error: Vignette re-building failed.
Execution halted