Build/check report for BioC 3.24 - BUILD results for missMethyl on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4800
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for missMethyl on nebbiolo2

To the developers/maintainers of the missMethyl package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/missMethyl.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: missMethyl

Version: 1.45.0

Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 missMethyl

StartedAt: 2026-04-23 18:47:36 -0400 (Thu, 23 Apr 2026)

EndedAt: 2026-04-23 19:00:49 -0400 (Thu, 23 Apr 2026)

EllapsedTime: 792.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 missMethyl
###
##############################################################################
##############################################################################


* checking for file ‘missMethyl/DESCRIPTION’ ... OK
* preparing ‘missMethyl’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘missMethyl.Rmd’ using rmarkdown

Quitting from missMethyl.Rmd:905-912 [dmrcatetopDMR]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.local()`:
! Failed to obtain 'hguid' cookie
---
Backtrace:
     ▆
  1. └─DMRcate::DMR.plot(...)
  2.   └─Gviz::IdeogramTrack(genome = genome, chromosome = as.character(seqnames(ranges.inplot)))
  3.     └─methods::new(...)
  4.       ├─methods::initialize(value, ...)
  5.       └─Gviz::initialize(value, ...)
  6.         └─Gviz (local) .local(.Object, ...)
  7.           └─Gviz:::.cacheGenomes(genome = genome)
  8.             ├─Gviz::.doCache(...)
  9.             │ ├─BiocGenerics::eval(expression, envir = callEnv)
 10.             │ └─base::eval(expression, envir = callEnv)
 11.             │   └─base::eval(expression, envir = callEnv)
 12.             ├─Gviz::.doCache(...)
 13.             │ ├─BiocGenerics::eval(expression, envir = callEnv)
 14.             │ └─base::eval(expression, envir = callEnv)
 15.             │   └─base::eval(expression, envir = callEnv)
 16.             ├─rtracklayer::browserSession()
 17.             └─rtracklayer::browserSession()
 18.               ├─rtracklayer::browserSession("UCSC", ...)
 19.               └─rtracklayer::browserSession("UCSC", ...)
 20.                 └─methods::new(class, ...)
 21.                   ├─methods::initialize(value, ...)
 22.                   └─rtracklayer::initialize(value, ...)
 23.                     └─rtracklayer (local) .local(.Object, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'missMethyl.Rmd' failed with diagnostics:
Failed to obtain 'hguid' cookie
--- failed re-building ‘missMethyl.Rmd’

SUMMARY: processing the following file failed:
  ‘missMethyl.Rmd’

Error: Vignette re-building failed.
Execution halted