| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-14 11:32 -0400 (Thu, 14 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4893 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 396/2374 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| clustSIGNAL 1.5.0 (landing page) Pratibha Panwar
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for clustSIGNAL in R Universe. | ||||||||||||||
|
To the developers/maintainers of the clustSIGNAL package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/clustSIGNAL.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: clustSIGNAL |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 clustSIGNAL |
| StartedAt: 2026-05-13 16:55:42 -0400 (Wed, 13 May 2026) |
| EndedAt: 2026-05-13 16:56:52 -0400 (Wed, 13 May 2026) |
| EllapsedTime: 70.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 clustSIGNAL
###
##############################################################################
##############################################################################
* checking for file ‘clustSIGNAL/DESCRIPTION’ ... OK
* preparing ‘clustSIGNAL’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘clustSIGNAL.Rmd’ using rmarkdown
Quitting from clustSIGNAL.Rmd:409-423 [hypothal_clusterMetrics]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `summarise()`:
ℹ In argument: `ARI = aricode::ARI(Cell_class, ClustSIGNAL)`.
ℹ In group 1: `samples = 1.-0.09`.
Caused by error in `sort_pairs()`:
! NA are not supported.
---
Backtrace:
▆
1. ├─... %>% ...
2. ├─dplyr::summarise(...)
3. ├─dplyr:::summarise.grouped_df(...)
4. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
5. │ ├─base::withCallingHandlers(...)
6. │ └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
7. │ └─base::lapply(.x, .f, ...)
8. │ └─dplyr (local) FUN(X[[i]], ...)
9. │ └─mask$eval_all_summarise(quo)
10. │ └─dplyr (local) eval()
11. └─aricode::ARI(Cell_class, ClustSIGNAL)
12. └─aricode::sort_pairs(c1, c2)
13. └─base::stop("NA are not supported.")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'clustSIGNAL.Rmd' failed with diagnostics:
ℹ In argument: `ARI = aricode::ARI(Cell_class, ClustSIGNAL)`.
ℹ In group 1: `samples = 1.-0.09`.
Caused by error in `sort_pairs()`:
! NA are not supported.
--- failed re-building ‘clustSIGNAL.Rmd’
SUMMARY: processing the following file failed:
‘clustSIGNAL.Rmd’
Error: Vignette re-building failed.
Execution halted