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This page was generated on 2025-12-19 15:55 -0500 (Fri, 19 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 926
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Package 120/230HostnameOS / ArchINSTALLBUILDCHECK
HDF5Array 1.39.0  (landing page)
Hervé Pagès
Snapshot Date: 2025-12-19 12:00 -0500 (Fri, 19 Dec 2025)
git_url: https://git.bioconductor.org/packages/HDF5Array
git_branch: devel
git_last_commit: 538f969
git_last_commit_date: 2025-10-29 12:21:26 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for HDF5Array on teran2

To the developers/maintainers of the HDF5Array package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HDF5Array
Version: 1.39.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data HDF5Array
StartedAt: 2025-12-19 13:01:30 -0500 (Fri, 19 Dec 2025)
EndedAt: 2025-12-19 13:06:32 -0500 (Fri, 19 Dec 2025)
EllapsedTime: 301.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data HDF5Array
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* checking for file ‘HDF5Array/DESCRIPTION’ ... OK
* preparing ‘HDF5Array’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘HDF5Array_performance.Rmd’ using rmarkdown
Error: processing vignette 'HDF5Array_performance.Rmd' failed with diagnostics:
Error writing to connection:  No space left on device
--- failed re-building ‘HDF5Array_performance.Rmd’

SUMMARY: processing the following file failed:
  ‘HDF5Array_performance.Rmd’

Error: Vignette re-building failed.
Execution halted

 *** caught segfault ***
address 0x558, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault (core dumped)