Back to Rapid builds (Linux only) of a subset of BioC 3.23
Report updated every 6 hours

This page was generated on 2025-11-29 10:17 -0500 (Sat, 29 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 918
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 104/230HostnameOS / ArchINSTALLBUILDCHECK
GEOquery 2.79.0  (landing page)
Sean Davis
Snapshot Date: 2025-11-29 06:00 -0500 (Sat, 29 Nov 2025)
git_url: https://git.bioconductor.org/packages/GEOquery
git_branch: devel
git_last_commit: ccaa9cd
git_last_commit_date: 2025-11-24 17:27:25 -0500 (Mon, 24 Nov 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for GEOquery on teran2

To the developers/maintainers of the GEOquery package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GEOquery
Version: 2.79.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOquery
StartedAt: 2025-11-29 06:55:44 -0500 (Sat, 29 Nov 2025)
EndedAt: 2025-11-29 06:56:09 -0500 (Sat, 29 Nov 2025)
EllapsedTime: 24.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOquery
###
##############################################################################
##############################################################################


* checking for file ‘GEOquery/DESCRIPTION’ ... OK
* preparing ‘GEOquery’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GEOquery.qmd’ using html
Error: processing vignette 'GEOquery.qmd' failed with diagnostics:
Quarto binary is required to build Quarto vignettes but is not
available.
ℹ Please make sure it is installed and found by `find_quarto()`.
--- failed re-building ‘GEOquery.qmd’

--- re-building ‘single-cell.qmd’ using html
Error: processing vignette 'single-cell.qmd' failed with diagnostics:
Quarto binary is required to build Quarto vignettes but is not
available.
ℹ Please make sure it is installed and found by `find_quarto()`.
--- failed re-building ‘single-cell.qmd’

SUMMARY: processing the following files failed:
  ‘GEOquery.qmd’ ‘single-cell.qmd’

Error: Vignette re-building failed.
Execution halted