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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('DOSE_4.6.0.tar.gz','quit-with-status'=TRUE)"
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── Installing DOSE ─────────────────────────────────────────────────────────────
✔ Package installed successfully
── DOSE session metadata ───────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpDYYYkQ/file774434b5b227/DOSE
→ BiocVersion: 3.23
→ Package: DOSE
→ PackageVersion: 4.6.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/DOSE.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/RtmpDYYYkQ/file774434b5b227/DOSE
→ installDir: /tmp/RtmpDYYYkQ/file7744372ff18c2
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on DOSE ───────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.5.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (25%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/DOSE.Rmd
* Checking package installation calls in R code...
* Checking for library/require of DOSE...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/clusterSim.R (line 30, column 12)
    • ...
    • R/utilities.R (line 58, column 29)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • geneSim.R (line 41, column 15)
    • geneSim.R (line 50, column 19)
    • mclusterSim.R (line 41, column 19)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/geneSim.R (line 57, column 29)
    • R/geneSim.R (line 65, column 16)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
! WARNING: Empty or missing \format sections found in data man page(s).
  Found in files:
    • man/DataSet.Rd
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/computeIC.Rd
    • man/dose_params.Rd

✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
  The following pages do not:
    • clusterSim.Rd
    • ...
    • simplot.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 11% of man
pages use at least one of these tags.
  Found in files:
    • clusterSim.Rd
    • mclusterSim.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • clusterSim.Rd
    • mclusterSim.Rd
* Checking package NEWS...
ℹ NOTE: More than one NEWS file found.See ?news for recognition ordering.
  Please remove one of the following:
    • DOSE/NEWS
    • DOSE/NEWS.md
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 22 lines (2%) are > 80 characters long.
  First few lines:
    • R/build_Anno.R#L7 Anno_clusterProfiler_Env <- get(".An ...
    • ...
    • vignettes/DOSE.Rmd#L52 __*G Yu*__, LG Wang, GR Yan, QY He. DOSE ...
ℹ NOTE: Consider 4 spaces instead of tabs; 16 lines (1%) contain tabs.
  First few lines:
    • R/build_Anno.R#L34 path2name <- unique(path2name) ...
    • ...
    • R/zzz.R#L5 .initial() ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 239 lines (20%) are
not.
  First few lines:
    • R/build_Anno.R#L13 times = v ...
    • ...
    • vignettes/DOSE.Rmd#L27 message = FALSE) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 2 WARNINGS | ℹ 14 NOTES
ℹ See the DOSE.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.