| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-04-18 11:38 -0400 (Sat, 18 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4957 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4686 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2338/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| universalmotif 1.29.2 (landing page) Benjamin Jean-Marie Tremblay
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for universalmotif in R Universe. | ||||||||||||||
|
To the developers/maintainers of the universalmotif package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/universalmotif.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: universalmotif |
| Version: 1.29.2 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data universalmotif |
| StartedAt: 2026-04-17 02:23:18 -0000 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 02:26:22 -0000 (Fri, 17 Apr 2026) |
| EllapsedTime: 183.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data universalmotif
###
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* checking for file ‘universalmotif/DESCRIPTION’ ... OK
* preparing ‘universalmotif’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown
--- finished re-building ‘Introduction.Rmd’
--- re-building ‘IntroductionToSequenceMotifs.Rmd’ using rmarkdown
--- finished re-building ‘IntroductionToSequenceMotifs.Rmd’
--- re-building ‘MotifComparisonAndPvalues.Rmd’ using rmarkdown
Quitting from MotifComparisonAndPvalues.Rmd:17-28 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'MotifDb':
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
---
Backtrace:
x
1. +-base::suppressMessages(suppressPackageStartupMessages(library(MotifDb)))
2. | \-base::withCallingHandlers(...)
3. +-base::suppressPackageStartupMessages(library(MotifDb))
4. | \-base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
5. \-base::library(MotifDb)
6. \-base::tryCatch(...)
7. \-base (local) tryCatchList(expr, classes, parentenv, handlers)
8. \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. \-value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MotifComparisonAndPvalues.Rmd' failed with diagnostics:
package or namespace load failed for 'MotifDb':
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
--- failed re-building ‘MotifComparisonAndPvalues.Rmd’
--- re-building ‘MotifManipulation.Rmd’ using rmarkdown
Quitting from MotifManipulation.Rmd:18-25 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'MotifDb':
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
---
Backtrace:
x
1. +-base::suppressMessages(suppressPackageStartupMessages(library(MotifDb)))
2. | \-base::withCallingHandlers(...)
3. +-base::suppressPackageStartupMessages(library(MotifDb))
4. | \-base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
5. \-base::library(MotifDb)
6. \-base::tryCatch(...)
7. \-base (local) tryCatchList(expr, classes, parentenv, handlers)
8. \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. \-value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MotifManipulation.Rmd' failed with diagnostics:
package or namespace load failed for 'MotifDb':
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
--- failed re-building ‘MotifManipulation.Rmd’
--- re-building ‘SequenceSearches.Rmd’ using rmarkdown
Quitting from SequenceSearches.Rmd:18-27 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'ggbio':
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
---
Backtrace:
x
1. +-base::suppressPackageStartupMessages(library(ggbio))
2. | \-base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
3. \-base::library(ggbio)
4. \-base::tryCatch(...)
5. \-base (local) tryCatchList(expr, classes, parentenv, handlers)
6. \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. \-value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SequenceSearches.Rmd' failed with diagnostics:
package or namespace load failed for 'ggbio':
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
--- failed re-building ‘SequenceSearches.Rmd’
SUMMARY: processing the following files failed:
‘MotifComparisonAndPvalues.Rmd’ ‘MotifManipulation.Rmd’
‘SequenceSearches.Rmd’
Error: Vignette re-building failed.
Execution halted