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This page was generated on 2026-04-18 11:38 -0400 (Sat, 18 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4957
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4686
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4627
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2260/2404HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidytof 1.5.1  (landing page)
Timothy Keyes
Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026)
git_url: https://git.bioconductor.org/packages/tidytof
git_branch: devel
git_last_commit: abf9a40
git_last_commit_date: 2026-02-03 11:18:06 -0400 (Tue, 03 Feb 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    ERROR    OK  
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped
See other builds for tidytof in R Universe.

BUILD results for tidytof on kunpeng2

To the developers/maintainers of the tidytof package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidytof.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: tidytof
Version: 1.5.1
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data tidytof
StartedAt: 2026-04-17 02:15:03 -0000 (Fri, 17 Apr 2026)
EndedAt: 2026-04-17 02:20:22 -0000 (Fri, 17 Apr 2026)
EllapsedTime: 319.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data tidytof
###
##############################################################################
##############################################################################


* checking for file ‘tidytof/DESCRIPTION’ ... OK
* preparing ‘tidytof’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘quality-control.Rmd’ using rmarkdown

Quitting from quality-control.Rmd:61-76 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'ExperimentHub'
---
Backtrace:
     ▆
  1. ├─tidytof::tof_preprocess(...)
  2. │ └─dplyr::mutate(...)
  3. ├─dplyr::mutate(...)
  4. ├─dplyr::rename_with(...)
  5. ├─dplyr::mutate(...)
  6. ├─tidytof::as_tof_tbl(HDCytoData::Levine_32dim_flowSet())
  7. └─base::loadNamespace(x)
  8.   ├─base::namespaceImportFrom(...)
  9.   │ └─base::asNamespace(ns)
 10.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 11.     └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 12.       └─base (local) withOneRestart(expr, restarts[[1L]])
 13.         └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'quality-control.Rmd' failed with diagnostics:
there is no package called 'ExperimentHub'
--- failed re-building ‘quality-control.Rmd’

--- re-building ‘clustering.Rmd’ using knitr
--- finished re-building ‘clustering.Rmd’

--- re-building ‘contributing-to-tidytof.Rmd’ using knitr
--- finished re-building ‘contributing-to-tidytof.Rmd’

--- re-building ‘differential-discovery-analysis.Rmd’ using knitr

Quitting from differential-discovery-analysis.Rmd:54-60 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'ExperimentHub'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   ├─base::namespaceImportFrom(...)
 3.   │ └─base::asNamespace(ns)
 4.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 5.     └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 6.       └─base (local) withOneRestart(expr, restarts[[1L]])
 7.         └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'differential-discovery-analysis.Rmd' failed with diagnostics:
there is no package called 'ExperimentHub'
--- failed re-building ‘differential-discovery-analysis.Rmd’

--- re-building ‘dimensionality-reduction.Rmd’ using knitr
--- finished re-building ‘dimensionality-reduction.Rmd’

--- re-building ‘downsampling.Rmd’ using knitr
--- finished re-building ‘downsampling.Rmd’

--- re-building ‘feature-extraction.Rmd’ using knitr

Quitting from feature-extraction.Rmd:51-57 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'ExperimentHub'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   ├─base::namespaceImportFrom(...)
 3.   │ └─base::asNamespace(ns)
 4.   └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 5.     └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 6.       └─base (local) withOneRestart(expr, restarts[[1L]])
 7.         └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'feature-extraction.Rmd' failed with diagnostics:
there is no package called 'ExperimentHub'
--- failed re-building ‘feature-extraction.Rmd’

--- re-building ‘modeling.Rmd’ using knitr
--- finished re-building ‘modeling.Rmd’

--- re-building ‘preprocessing.Rmd’ using knitr
--- finished re-building ‘preprocessing.Rmd’

--- re-building ‘reading-and-writing-data.Rmd’ using knitr
--- finished re-building ‘reading-and-writing-data.Rmd’

--- re-building ‘tidytof.Rmd’ using knitr
--- finished re-building ‘tidytof.Rmd’

SUMMARY: processing the following files failed:
  ‘quality-control.Rmd’ ‘differential-discovery-analysis.Rmd’
  ‘feature-extraction.Rmd’

Error: Vignette re-building failed.
Execution halted