Multiple platform build/check report for BioC 3.23 - BUILD results for tidybulk on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4880
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"	4577
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for tidybulk on kjohnson3

To the developers/maintainers of the tidybulk package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidybulk.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: tidybulk

Version: 2.1.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tidybulk

StartedAt: 2026-03-26 17:55:02 -0400 (Thu, 26 Mar 2026)

EndedAt: 2026-03-26 17:55:51 -0400 (Thu, 26 Mar 2026)

EllapsedTime: 48.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tidybulk
###
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* checking for file ‘tidybulk/DESCRIPTION’ ... OK
* preparing ‘tidybulk’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to process help pages)
* creating vignettes ... ERROR
--- re-building ‘comparison_coding.Rmd’ using rmarkdown
Loading required namespace: AnnotationDbi
--- finished re-building ‘comparison_coding.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown

Quitting from introduction.Rmd:176-195 [add-gene-symbol]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'org.Hs.eg.db':
 .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
  call: h(simpleError(msg, call))
  error: error in evaluating the argument 'conn' in selecting a method for function 'dbGetQuery': unable to find an inherited method for function 'dbconn' for signature 'x = "Go3AnnDbBimap"'
---
Backtrace:
    ▆
 1. └─base::library(org.Hs.eg.db)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction.Rmd' failed with diagnostics:
package or namespace load failed for 'org.Hs.eg.db':
 .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
  call: h(simpleError(msg, call))
  error: error in evaluating the argument 'conn' in selecting a method for function 'dbGetQuery': unable to find an inherited method for function 'dbconn' for signature 'x = "Go3AnnDbBimap"'
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted