Back to Build/check report for BioC 3.23:   simplified   long
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2025-11-08 11:32 -0500 (Sat, 08 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4821
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2168/2323HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
terraTCGAdata 1.15.0  (landing page)
Marcel Ramos
Snapshot Date: 2025-11-07 13:40 -0500 (Fri, 07 Nov 2025)
git_url: https://git.bioconductor.org/packages/terraTCGAdata
git_branch: devel
git_last_commit: 752f735
git_last_commit_date: 2025-10-29 11:16:25 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for terraTCGAdata on nebbiolo1

To the developers/maintainers of the terraTCGAdata package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/terraTCGAdata.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: terraTCGAdata
Version: 1.15.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data terraTCGAdata
StartedAt: 2025-11-07 20:25:33 -0500 (Fri, 07 Nov 2025)
EndedAt: 2025-11-07 20:26:05 -0500 (Fri, 07 Nov 2025)
EllapsedTime: 32.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data terraTCGAdata
###
##############################################################################
##############################################################################


* checking for file ‘terraTCGAdata/DESCRIPTION’ ... OK
* preparing ‘terraTCGAdata’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘terraTCGAdata.Rmd’ using rmarkdown

Quitting from terraTCGAdata.Rmd:79-81 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `gcloud_exists()`:
! could not find function "gcloud_exists"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'terraTCGAdata.Rmd' failed with diagnostics:
could not find function "gcloud_exists"
--- failed re-building ‘terraTCGAdata.Rmd’

SUMMARY: processing the following file failed:
  ‘terraTCGAdata.Rmd’

Error: Vignette re-building failed.
Execution halted