Arshi Arora
| Snapshot Date: 2026-03-08 13:40 -0400 (Sun, 08 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/survClust |
| git_branch: devel |
| git_last_commit: eb66f82 |
| git_last_commit_date: 2025-10-29 11:30:24 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-09 11:34 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4508 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2157/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| survClust 1.5.0 (landing page) Arshi Arora
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for survClust in R Universe. | ||||||||||||||
|
To the developers/maintainers of the survClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/survClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: survClust |
| Version: 1.5.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data survClust |
| StartedAt: 2026-03-08 16:20:00 -0400 (Sun, 08 Mar 2026) |
| EndedAt: 2026-03-08 16:20:19 -0400 (Sun, 08 Mar 2026) |
| EllapsedTime: 19.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data survClust
###
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* checking for file ‘survClust/DESCRIPTION’ ... OK
* preparing ‘survClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘survClust_vignette.Rmd’ using rmarkdown
2026-03-08 16:20:14.767 R[62762:118250969] XType: Using static font registry.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmp2HVcjP/Rbuilde8b714b0a117/survClust/vignettes/survClust_vignette_files/figure-html/unnamed-chunk-7-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmp2HVcjP/Rbuilde8b714b0a117/survClust/vignettes/survClust_vignette_files/figure-html/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmp2HVcjP/Rbuilde8b714b0a117/survClust/vignettes/survClust_vignette_files/figure-html/unnamed-chunk-11-1.png" but not available.
Quitting from survClust_vignette.Rmd:235-255 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `reducer$value.cache[[as.character(idx)]] <- values`:
! wrong args for environment subassignment
---
Backtrace:
▆
1. ├─BiocParallel::bplapply(2:7, sim_cvrounds)
2. └─BiocParallel::bplapply(2:7, sim_cvrounds)
3. ├─BiocParallel::bplapply(...)
4. └─BiocParallel::bplapply(...)
5. └─BiocParallel:::.bpinit(...)
6. ├─BiocParallel::bploop(...)
7. └─BiocParallel:::bploop.lapply(...)
8. └─BiocParallel:::.bploop_impl(...)
9. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
10. ├─BiocParallel:::.reducer_add(reducer, njob, value)
11. └─BiocParallel:::.reducer_add(reducer, njob, value)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'survClust_vignette.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘survClust_vignette.Rmd’
SUMMARY: processing the following file failed:
‘survClust_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted