| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-01-08 11:35 -0500 (Thu, 08 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1927/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scrapper 1.5.7 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the scrapper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scrapper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scrapper |
| Version: 1.5.7 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL scrapper |
| StartedAt: 2026-01-07 15:17:47 -0500 (Wed, 07 Jan 2026) |
| EndedAt: 2026-01-07 15:17:55 -0500 (Wed, 07 Jan 2026) |
| EllapsedTime: 8.7 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL scrapper
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* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘scrapper’ ...
** this is package ‘scrapper’ version ‘1.5.7’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rigraphlib/igraph/include/igraph' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BiocNeighbors/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rigraphlib/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rigraphlib/igraph/include/igraph' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/beachmat/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BiocNeighbors/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rigraphlib/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c adt_quality_control.cpp -o adt_quality_control.o
In file included from /home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp/proxy/proxy.h:24,
from /home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/RcppCommon.h:133,
from /home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp.h:27,
from config.h:4,
from adt_quality_control.cpp:1:
/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp/proxy/AttributeProxy.h: In instantiation of ‘bool Rcpp::AttributeProxyPolicy<CLASS>::hasAttribute(const std::string&) const [with CLASS = Rcpp::Vector<19>; std::string = std::__cxx11::basic_string<char>]’:
utils_qc.h:85:31: required from here
/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp/proxy/AttributeProxy.h:91:27: error: ‘R_hasAttrib’ was not declared in this scope; did you mean ‘R_mapAttrib’?
91 | return R_hasAttrib(static_cast<const CLASS&>(*this).get__(),
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
92 | Rf_install(attr.c_str()));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:209: adt_quality_control.o] Error 1
ERROR: compilation failed for package ‘scrapper’
* removing ‘/home/biocbuild/bbs-3.23-bioc/R/site-library/scrapper’
* restoring previous ‘/home/biocbuild/bbs-3.23-bioc/R/site-library/scrapper’