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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scGraphVerse
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* checking for file ‘scGraphVerse/DESCRIPTION’ ... OK
* preparing ‘scGraphVerse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
-----------------------------------
* installing *source* package ‘scGraphVerse’ ...
** this is package ‘scGraphVerse’ version ‘1.1.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c regTree.c -o regTree.o
regTree.c:232:15: warning: variable 'lc' set but not used [-Wunused-but-set-variable]
232 | int last, lc, nl, nr, npopl, npopr;
| ^
regTree.c:418:19: warning: unused variable 'cbestsplit' [-Wunused-variable]
418 | int i, k, m, *cbestsplit, s;
| ^~~~~~~~~~
2 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c regrf.c -o regrf.o
regrf.c:62:12: warning: unused variable 'errts' [-Wunused-variable]
62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand,
| ^~~~~
regrf.c:62:25: warning: variable 'averrb' set but not used [-Wunused-but-set-variable]
62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand,
| ^
regrf.c:62:53: warning: unused variable 'r' [-Wunused-variable]
62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand,
| ^
regrf.c:63:5: warning: variable 'errb' set but not used [-Wunused-but-set-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^
regrf.c:63:11: warning: unused variable 'resid' [-Wunused-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~~
regrf.c:63:23: warning: variable 'ooberr' set but not used [-Wunused-but-set-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^
regrf.c:63:31: warning: unused variable 'ooberrperm' [-Wunused-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~~~~~~~
regrf.c:63:43: warning: unused variable 'delta' [-Wunused-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~~
regrf.c:63:51: warning: variable 'resOOB' set but not used [-Wunused-but-set-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^
regrf.c:65:18: warning: variable 'xtmp' set but not used [-Wunused-but-set-variable]
65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
| ^
regrf.c:65:30: warning: variable 'ytr' set but not used [-Wunused-but-set-variable]
65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
| ^
regrf.c:65:36: warning: unused variable 'ytree' [-Wunused-variable]
65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
| ^~~~~
regrf.c:67:15: warning: unused variable 'mr' [-Wunused-variable]
67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~
regrf.c:67:22: warning: unused variable 'nOOB' [-Wunused-variable]
67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~~~
regrf.c:67:31: warning: unused variable 'jout' [-Wunused-variable]
67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~~~
regrf.c:67:61: warning: variable 'nPerm' set but not used [-Wunused-but-set-variable]
67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^
regrf.c:69:10: warning: variable 'oobpair' set but not used [-Wunused-but-set-variable]
69 | int *oobpair, varImp, localImp, *varUsed, kk;
| ^
regrf.c:71:22: warning: variable 'nodex' set but not used [-Wunused-but-set-variable]
71 | int *in, *nind, *nodex, *nodexts;
| ^
regrf.c:71:30: warning: unused variable 'nodexts' [-Wunused-variable]
71 | int *in, *nind, *nodex, *nodexts;
| ^~~~~~~
19 warnings generated.
clang -arch arm64 -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o scGraphVerse.so init.o regTree.o regrf.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpxyIpX1/Rinst13f2d1d20edd9/00LOCK-scGraphVerse/00new/scGraphVerse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so, 0x0006): Symbol not found: _R_getRegisteredNamespace
Referenced from: <D5FEE207-EB8F-3FC2-BC24-84E97E708ECA> /Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so
Expected in: <9885FFC9-0B1B-386C-8515-0CC182A63B5A> /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘scGraphVerse’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpxyIpX1/Rinst13f2d1d20edd9/scGraphVerse’
-----------------------------------
ERROR: package installation failed
