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This page was generated on 2025-10-23 11:30 -0400 (Thu, 23 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 3809
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1841/2355HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rRDP 1.43.1  (landing page)
Michael Hahsler
Snapshot Date: 2025-10-22 15:48 -0400 (Wed, 22 Oct 2025)
git_url: https://git.bioconductor.org/packages/rRDP
git_branch: devel
git_last_commit: 03187f3
git_last_commit_date: 2025-10-08 08:06:46 -0400 (Wed, 08 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for rRDP on nebbiolo1

To the developers/maintainers of the rRDP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rRDP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: rRDP
Version: 1.43.1
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rRDP
StartedAt: 2025-10-23 00:18:26 -0000 (Thu, 23 Oct 2025)
EndedAt: 2025-10-23 00:18:40 -0000 (Thu, 23 Oct 2025)
EllapsedTime: 14.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rRDP
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* checking for file ‘rRDP/DESCRIPTION’ ... OK
* preparing ‘rRDP’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘rRDP.Rmd’ using rmarkdown

Quitting from rRDP.Rmd:108-111 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `rdp()`:
! Install package 'rRDPData' for the trained 16S rRNA classifier.
---
Backtrace:
    ▆
 1. ├─stats::predict(rdp(), seq)
 2. └─rRDP::rdp()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rRDP.Rmd' failed with diagnostics:
Install package 'rRDPData' for the trained 16S rRNA classifier.
--- failed re-building ‘rRDP.Rmd’

SUMMARY: processing the following file failed:
  ‘rRDP.Rmd’

Error: Vignette re-building failed.
Execution halted