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This page was generated on 2025-12-30 11:35 -0500 (Tue, 30 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" 4807
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4593
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1317/2332HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mitch 1.23.0  (landing page)
Mark Ziemann
Snapshot Date: 2025-12-29 13:40 -0500 (Mon, 29 Dec 2025)
git_url: https://git.bioconductor.org/packages/mitch
git_branch: devel
git_last_commit: e45bba3
git_last_commit_date: 2025-10-29 10:55:52 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for mitch on kjohnson3

To the developers/maintainers of the mitch package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mitch.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mitch
Version: 1.23.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitch
StartedAt: 2025-12-29 16:59:32 -0500 (Mon, 29 Dec 2025)
EndedAt: 2025-12-29 17:02:09 -0500 (Mon, 29 Dec 2025)
EllapsedTime: 156.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitch
###
##############################################################################
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* checking for file ‘mitch/DESCRIPTION’ ... OK
* preparing ‘mitch’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘infiniumMethArrayWorkflow.Rmd’ using rmarkdown

Quitting from infiniumMethArrayWorkflow.Rmd:105-108 [import1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://ziemann-lab.net/public/gmea/dma3a.tsv'
---
Backtrace:
    ▆
 1. └─utils::read.table(...)
 2.   └─base::file(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'infiniumMethArrayWorkflow.Rmd' failed with diagnostics:
cannot open the connection to 'https://ziemann-lab.net/public/gmea/dma3a.tsv'
--- failed re-building ‘infiniumMethArrayWorkflow.Rmd’

--- re-building ‘mitchWorkflow.Rmd’ using rmarkdown
trying URL 'https://reactome.org/download/current/ReactomePathways.gmt.zip'
Content type 'application/zip' length 291075 bytes (284 KB)
==================================================
downloaded 284 KB

2025-12-29 17:02:04.777 R[40949:571005274] XType: Using static font registry.
--- finished re-building ‘mitchWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘infiniumMethArrayWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted