Back to Build/check report for BioC 3.23:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1270/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mia 1.19.0  (landing page)
Tuomas Borman
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/mia
git_branch: devel
git_last_commit: ba530f5
git_last_commit_date: 2025-10-29 11:07:20 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for mia on kjohnson3

To the developers/maintainers of the mia package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mia.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mia
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mia
StartedAt: 2025-11-12 16:42:15 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 16:42:56 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 40.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mia
###
##############################################################################
##############################################################################


* checking for file ‘mia/DESCRIPTION’ ... OK
* preparing ‘mia’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘mia.Rmd’ using rmarkdown

Quitting from mia.Rmd:286-289 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'phyloseq'
---
Backtrace:
    ▆
 1. └─base::library(phyloseq)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mia.Rmd' failed with diagnostics:
there is no package called 'phyloseq'
--- failed re-building ‘mia.Rmd’

SUMMARY: processing the following file failed:
  ‘mia.Rmd’

Error: Vignette re-building failed.
Execution halted