Multiple platform build/check report for BioC 3.23 - BUILD results for metahdep on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4880
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"	4577
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for metahdep on kjohnson3

To the developers/maintainers of the metahdep package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: metahdep

Version: 1.69.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data metahdep

StartedAt: 2026-03-26 16:57:07 -0400 (Thu, 26 Mar 2026)

EndedAt: 2026-03-26 16:57:08 -0400 (Thu, 26 Mar 2026)

EllapsedTime: 1.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data metahdep
###
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* checking for file ‘metahdep/DESCRIPTION’ ... OK
* preparing ‘metahdep’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘metahdep’ ...
** this is package ‘metahdep’ version ‘1.69.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c metahdep.c -o metahdep.o
metahdep.c:471:79: error: incompatible pointer to integer conversion passing 'const char *' to parameter of type 'char' [-Wint-conversion]
  471 |                                 index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
      |                                                                                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:203:17: note: expanded from macro 'CHAR'
  203 | #define CHAR(x) R_CHAR(x)
      |                 ^~~~~~~~~
metahdep.c:372:103: note: passing argument to parameter 'chipset_name' here
  372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
      |                                                                                                       ^
1 error generated.
make: *** [metahdep.o] Error 1
ERROR: compilation failed for package ‘metahdep’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpS6NA3k/Rinst8f194bf39f51/metahdep’
      -----------------------------------
ERROR: package installation failed