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This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4957
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4686
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4627
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1247/2404HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
megadepth 1.21.0  (landing page)
David Zhang
Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026)
git_url: https://git.bioconductor.org/packages/megadepth
git_branch: devel
git_last_commit: ae67061
git_last_commit_date: 2026-03-31 13:27:10 -0400 (Tue, 31 Mar 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped
See other builds for megadepth in R Universe.

BUILD results for megadepth on kunpeng2

To the developers/maintainers of the megadepth package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/megadepth.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: megadepth
Version: 1.21.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data megadepth
StartedAt: 2026-04-17 00:27:34 -0000 (Fri, 17 Apr 2026)
EndedAt: 2026-04-17 00:27:56 -0000 (Fri, 17 Apr 2026)
EllapsedTime: 22.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data megadepth
###
##############################################################################
##############################################################################


* checking for file ‘megadepth/DESCRIPTION’ ... OK
* preparing ‘megadepth’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘megadepth.Rmd’ using rmarkdown
sh: line 1: /home/biocbuild/tmp/RtmpAnIcxD/megadepth: cannot execute binary file: Exec format error

Quitting from megadepth.Rmd:150-158 [example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! '/home/biocbuild/tmp/RtmpAnIcxD/bw.mean.annotation.tsv' does not exist.
---
Backtrace:
    ▆
 1. ├─megadepth::get_coverage(example_bw, op = "mean", annotation = annotation_file)
 2. │ └─megadepth::read_coverage(paste0(prefix, ".annotation.tsv"))
 3. │   └─megadepth::read_coverage_table(tsv_file)
 4. │     └─readr::read_delim(...)
 5. │       └─vroom::vroom(...)
 6. │         └─vroom:::vroom_(...)
 7. └─vroom (local) `<fn>`("/home/biocbuild/tmp/RtmpAnIcxD/bw.mean.annotation.tsv")
 8.   └─vroom:::check_path(path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'megadepth.Rmd' failed with diagnostics:
'/home/biocbuild/tmp/RtmpAnIcxD/bw.mean.annotation.tsv' does not exist.
--- failed re-building ‘megadepth.Rmd’

SUMMARY: processing the following file failed:
  ‘megadepth.Rmd’

Error: Vignette re-building failed.
Execution halted