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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4013 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1176/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maSigPro 1.83.0 (landing page) Maria Jose Nueda
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the maSigPro package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maSigPro |
| Version: 1.83.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.83.0.tar.gz |
| StartedAt: 2025-11-12 19:20:19 -0500 (Wed, 12 Nov 2025) |
| EndedAt: 2025-11-12 19:21:16 -0500 (Wed, 12 Nov 2025) |
| EllapsedTime: 56.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: maSigPro.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.83.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/maSigPro.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.83.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
maSigPro.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maSigPro ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘maSigPro’ ... ** this is package ‘maSigPro’ version ‘1.83.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maSigPro)
maSigPro.Rcheck/maSigPro-Ex.timings
| name | user | system | elapsed | |
| ISOdata | 3.373 | 0.148 | 3.699 | |
| ISOdesign | 3.359 | 0.125 | 3.694 | |
| IsoModel | 3.395 | 0.142 | 3.754 | |
| IsoPlot | 3.372 | 0.127 | 3.616 | |
| NBdata | 0.000 | 0.001 | 0.001 | |
| NBdesign | 0.000 | 0.000 | 0.001 | |
| PlotGroups | 0.010 | 0.001 | 0.011 | |
| PlotProfiles | 0.002 | 0.001 | 0.002 | |
| PodiumChange | 3.399 | 0.115 | 3.762 | |
| T.fit | 1.525 | 0.016 | 1.615 | |
| average.rows | 0.001 | 0.000 | 0.001 | |
| data.abiotic | 0.002 | 0.001 | 0.002 | |
| edesign.abiotic | 0.001 | 0.000 | 0.002 | |
| edesignCT | 0.000 | 0.000 | 0.001 | |
| edesignDR | 0.000 | 0.001 | 0.001 | |
| get.siggenes | 0.734 | 0.007 | 0.773 | |
| getDS | 3.461 | 0.120 | 3.689 | |
| getDSPatterns | 3.390 | 0.126 | 3.627 | |
| i.rank | 0 | 0 | 0 | |
| maSigProUsersGuide | 0.002 | 0.003 | 0.005 | |
| make.design.matrix | 0.002 | 0.004 | 0.006 | |
| p.vector | 0.499 | 0.007 | 0.519 | |
| position | 0 | 0 | 0 | |
| reg.coeffs | 0 | 0 | 0 | |
| see.genes | 0.181 | 0.010 | 0.199 | |
| seeDS | 3.384 | 0.134 | 3.667 | |
| stepback | 0.007 | 0.000 | 0.007 | |
| stepfor | 0.023 | 0.000 | 0.024 | |
| suma2Venn | 0.007 | 0.001 | 0.008 | |
| tableDS | 3.482 | 0.121 | 3.743 | |
| two.ways.stepback | 0.019 | 0.000 | 0.022 | |
| two.ways.stepfor | 0.027 | 0.001 | 0.028 | |