| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-27 11:33 -0400 (Fri, 27 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4880 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4577 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1138/2372 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| leapR 0.99.9 (landing page) Sara Gosline
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for leapR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the leapR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/leapR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: leapR |
| Version: 0.99.9 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data leapR |
| StartedAt: 2026-03-26 16:50:52 -0400 (Thu, 26 Mar 2026) |
| EndedAt: 2026-03-26 16:51:07 -0400 (Thu, 26 Mar 2026) |
| EllapsedTime: 15.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data leapR
###
##############################################################################
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* checking for file ‘leapR/DESCRIPTION’ ... OK
* preparing ‘leapR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘examples.Rmd’ using rmarkdown
trying URL 'https://api.figshare.com/v2/file/download/56536217'
Quitting from examples.Rmd:46-63 [omicsdata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://api.figshare.com/v2/file/download/56536217'
---
Backtrace:
▆
1. └─utils::download.file(url, method = "libcurl", destfile = "protData.rda")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'examples.Rmd' failed with diagnostics:
cannot open URL 'https://api.figshare.com/v2/file/download/56536217'
--- failed re-building ‘examples.Rmd’
--- re-building ‘leapR.Rmd’ using rmarkdown
trying URL 'https://api.figshare.com/v2/file/download/56536217'
Quitting from leapR.Rmd:151-168 [omicsdata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://api.figshare.com/v2/file/download/56536217'
---
Backtrace:
▆
1. └─utils::download.file(url, method = "libcurl", destfile = "protData.rda")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'leapR.Rmd' failed with diagnostics:
cannot open URL 'https://api.figshare.com/v2/file/download/56536217'
--- failed re-building ‘leapR.Rmd’
--- re-building ‘order-enrichment.Rmd’ using rmarkdown
trying URL 'https://api.figshare.com/v2/file/download/56536217'
Quitting from order-enrichment.Rmd:38-53 [load data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://api.figshare.com/v2/file/download/56536217'
---
Backtrace:
▆
1. └─utils::download.file(url, method = "libcurl", destfile = "protData.rda")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'order-enrichment.Rmd' failed with diagnostics:
cannot open URL 'https://api.figshare.com/v2/file/download/56536217'
--- failed re-building ‘order-enrichment.Rmd’
SUMMARY: processing the following files failed:
‘examples.Rmd’ ‘leapR.Rmd’ ‘order-enrichment.Rmd’
Error: Vignette re-building failed.
Execution halted