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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1065/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iscream 1.1.1  (landing page)
James Eapen
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/iscream
git_branch: devel
git_last_commit: b1bda1c
git_last_commit_date: 2025-10-29 14:17:07 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for iscream on kjohnson3

To the developers/maintainers of the iscream package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iscream.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: iscream
Version: 1.1.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data iscream
StartedAt: 2025-11-12 16:32:42 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 16:33:18 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 35.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data iscream
###
##############################################################################
##############################################################################


* checking for file ‘iscream/DESCRIPTION’ ... OK
* preparing ‘iscream’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘TSS.Rmd’ using rmarkdown
--- finished re-building ‘TSS.Rmd’

--- re-building ‘data_structures.Rmd’ using rmarkdown
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
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[----|----|----|----|----|----|----|----|----|----|
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[----|----|----|----|----|----|----|----|----|----|
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Quitting from data_structures.Rmd:126-132 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! The 'bsseq' package must be installed for this functionality
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'data_structures.Rmd' failed with diagnostics:
The 'bsseq' package must be installed for this functionality
--- failed re-building ‘data_structures.Rmd’

--- re-building ‘htslib.rmd’ using rmarkdown
2025-11-12 16:33:14.165 R[87243:2400987] XType: Using static font registry.
--- finished re-building ‘htslib.rmd’

--- re-building ‘iscream.Rmd’ using rmarkdown
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building ‘iscream.Rmd’

--- re-building ‘manuscript_data.Rmd’ using rmarkdown
--- finished re-building ‘manuscript_data.Rmd’

--- re-building ‘performance.Rmd’ using rmarkdown
--- finished re-building ‘performance.Rmd’

--- re-building ‘tabix.Rmd’ using rmarkdown
--- finished re-building ‘tabix.Rmd’

SUMMARY: processing the following file failed:
  ‘data_structures.Rmd’

Error: Vignette re-building failed.
Execution halted