Till Soerensen
| Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 166e477 |
| git_last_commit_date: 2025-10-29 10:24:29 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4957 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4686 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1071/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.43.0 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for immunoClust in R Universe. | ||||||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.43.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2026-04-17 00:12:40 -0000 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 00:16:52 -0000 (Fri, 17 Apr 2026) |
| EllapsedTime: 252.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=155<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=109) has 3 sub-cluster at 4 (14), ICL=129<>30
split 2 into 3 clusters
cluster 1(N=194) has 6 sub-cluster at 6 (19), ICL=19<>30
cluster 1(N=194) has 6 sub-cluster at 6 (19), ICL=0<>30
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 3(N=52) has 2 sub-cluster at 2 (31), ICL=40<>34
split 3 into 2 clusters
cluster 1(N=418) has 3 sub-cluster at 3 (14), ICL=24<>34
cluster 4(N=63) has 5 sub-cluster at 5 (84), ICL=23<>34
cluster 1(N=418) has 3 sub-cluster at 3 (14), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 4 takes 0 mins, 6 iterations
cluster 1(N=846) has 4 sub-cluster at 4 (23), ICL=37<>37
cluster 4(N=100) has 3 sub-cluster at 3 (8), ICL=35<>37
cluster 2(N=125) has 3 sub-cluster at 6 (34), ICL=14<>37
cluster 3(N=141) has 7 sub-cluster at 7 (23), ICL=14<>37
cluster 1(N=846) has 4 sub-cluster at 4 (23), ICL=0<>37
Model Refinement takes 0.1 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=4->4 N=2420
EM 4 takes 0 mins, 5 iterations
cluster 1(N=1686) has 2 sub-cluster at 2 (5), ICL=154<>41
split 1 into 2 clusters
cluster 4(N=226) has 2 sub-cluster at 2 (6), ICL=119<>41
split 4 into 2 clusters
cluster 3(N=299) has 2 sub-cluster at 2 (7), ICL=34<>41
cluster 2(N=224) has 2 sub-cluster at 2 (5), ICL=31<>41
cluster 1(N=1686) has 2 sub-cluster at 2 (5), ICL=0<>41
Model Refinement takes 0.17 mins(max 1: 0.083)
Fit Model 5 of (6/10) K=4->6 N=4841
EM 6 takes 0 mins, 10 iterations
cluster 1(N=118) has 3 sub-cluster at 3 (16), ICL=95<>45
split 1 into 3 clusters
cluster 4(N=569) has 2 sub-cluster at 2 (7), ICL=48<>45
split 4 into 2 clusters
cluster 6(N=277) has 2 sub-cluster at 2 (16), ICL=28<>45
cluster 5(N=179) has 2 sub-cluster at 2 (12), ICL=20<>45
cluster 2(N=3275) has 3 sub-cluster at 3 (8), ICL=14<>45
cluster 3(N=447) has 7 sub-cluster at 8 (35), ICL=12<>45
cluster 1(N=118) has 3 sub-cluster at 3 (16), ICL=0<>45
Model Refinement takes 0.23 mins(max 2: 0.1)
Fit Model 6 of (6/10) K=6->9 N=9682
EM 9 takes 0 mins, 6 iterations
cluster 4(N=6477) has 3 sub-cluster at 3 (9), ICL=111<>48
split 4 into 3 clusters
cluster 9(N=557) has 3 sub-cluster at 3 (8), ICL=63<>48
split 9 into 3 clusters
cluster 5(N=920) has 3 sub-cluster at 3 (28), ICL=52<>48
split 5 into 3 clusters
cluster 1(N=55) has 2 sub-cluster at 2 (100), ICL=48<>48
cluster 8(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 7(N=324) has 3 sub-cluster at 3 (17), ICL=23<>48
cluster 2(N=119) has 6 sub-cluster at 6 (76), ICL=22<>48
cluster 3(N=76) has 3 sub-cluster at 4 (11), ICL=4.8<>48
cluster 1(N=55) has 2 sub-cluster at 2 (100), ICL=0<>48
Model Refinement takes 0.32 mins(max 4: 0.1)
Fit Model 7 of (6/10) K=9->15 N=9682
EM 15 takes 0.033 mins, 20 iterations
cluster 3(N=74) has 6 sub-cluster at 8 (63), ICL=45<>48
cluster 12(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 2(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 15(N=79) has 2 sub-cluster at 2 (18), ICL=20<>48
cluster 11(N=390) has 2 sub-cluster at 2 (6), ICL=17<>48
cluster 13(N=370) has 7 sub-cluster at 8 (21), ICL=16<>48
cluster 14(N=171) has 5 sub-cluster at 6 (39), ICL=9.1<>48
cluster 5(N=308) has 7 sub-cluster at 7 (44), ICL=5.9<>48
cluster 8(N=34) has 2 sub-cluster at 2 (100), ICL=4.2<>48
cluster 2(N=123) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.5 mins(max 4: 0.1)
Fit Model 8 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.5 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=148<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=94) has 3 sub-cluster at 3 (13), ICL=115<>25
split 2 into 3 clusters
cluster 1(N=208) has 2 sub-cluster at 2 (11), ICL=14<>25
cluster 1(N=208) has 2 sub-cluster at 2 (11), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 1(N=403) has 2 sub-cluster at 2 (6), ICL=65<>28
split 1 into 2 clusters
cluster 2(N=87) has 2 sub-cluster at 2 (11), ICL=22<>28
cluster 3(N=69) has 2 sub-cluster at 2 (14), ICL=17<>28
cluster 4(N=49) has 3 sub-cluster at 3 (92), ICL=10<>28
cluster 1(N=403) has 2 sub-cluster at 2 (6), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 5 iterations
cluster 5(N=112) has 2 sub-cluster at 2 (5), ICL=67<>31
split 5 into 2 clusters
cluster 2(N=26) has 2 sub-cluster at 2 (20), ICL=20<>31
cluster 3(N=137) has 4 sub-cluster at 5 (29), ICL=18<>31
cluster 4(N=112) has 2 sub-cluster at 2 (100), ICL=5<>31
cluster 2(N=26) has 2 sub-cluster at 2 (20), ICL=0<>31
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 7 iterations
cluster 4(N=245) has 2 sub-cluster at 2 (6), ICL=77<>34
split 4 into 2 clusters
cluster 3(N=289) has 2 sub-cluster at 2 (6), ICL=44<>34
split 3 into 2 clusters
cluster 2(N=42) has 3 sub-cluster at 3 (8), ICL=33<>34
cluster 5(N=142) has 3 sub-cluster at 3 (5), ICL=24<>34
cluster 6(N=95) has 5 sub-cluster at 5 (47), ICL=24<>34
cluster 2(N=42) has 3 sub-cluster at 3 (8), ICL=0<>34
Model Refinement takes 0.18 mins(max 1: 0.083)
Fit Model 5 of (6/10) K=6->8 N=4841
EM 8 takes 0 mins, 7 iterations
cluster 2(N=88) has 2 sub-cluster at 2 (6), ICL=54<>37
split 2 into 2 clusters
cluster 1(N=3275) has 3 sub-cluster at 3 (8), ICL=50<>37
split 1 into 3 clusters
cluster 7(N=282) has 3 sub-cluster at 3 (11), ICL=36<>37
cluster 6(N=31) has 2 sub-cluster at 2 (9), ICL=24<>37
cluster 8(N=185) has 8 sub-cluster at 8 (53), ICL=22<>37
cluster 5(N=442) has 4 sub-cluster at 4 (16), ICL=21<>37
cluster 4(N=180) has 6 sub-cluster at 7 (39), ICL=21<>37
cluster 3(N=459) has 8 sub-cluster at 8 (36), ICL=8.4<>37
cluster 1(N=3275) has 3 sub-cluster at 3 (8), ICL=0<>37
Model Refinement takes 0.25 mins(max 1: 0.1)
Fit Model 6 of (6/10) K=8->11 N=9682
EM 11 takes 0 mins, 8 iterations
cluster 10(N=561) has 3 sub-cluster at 3 (8), ICL=66<>40
split 10 into 3 clusters
cluster 11(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40
split 11 into 2 clusters
cluster 8(N=908) has 3 sub-cluster at 3 (12), ICL=34<>40
cluster 9(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40
cluster 5(N=122) has 3 sub-cluster at 3 (28), ICL=29<>40
cluster 7(N=369) has 3 sub-cluster at 4 (19), ICL=19<>40
cluster 2(N=312) has 2 sub-cluster at 2 (8), ICL=7.5<>40
cluster 4(N=75) has 3 sub-cluster at 4 (11), ICL=2.1<>40
cluster 2(N=312) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.45 mins(max 1: 0.1)
Fit Model 7 of (6/10) K=11->14 N=9682
EM 14 takes 0.017 mins, 7 iterations
cluster 8(N=898) has 3 sub-cluster at 3 (9), ICL=33<>40
cluster 5(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 9(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40
cluster 12(N=90) has 3 sub-cluster at 3 (15), ICL=23<>40
cluster 13(N=221) has 6 sub-cluster at 8 (49), ICL=17<>40
cluster 7(N=385) has 3 sub-cluster at 4 (15), ICL=16<>40
cluster 4(N=74) has 3 sub-cluster at 4 (47), ICL=16<>40
cluster 10(N=365) has 7 sub-cluster at 8 (26), ICL=15<>40
cluster 14(N=220) has 6 sub-cluster at 7 (38), ICL=13<>40
cluster 11(N=183) has 4 sub-cluster at 5 (35), ICL=9.9<>40
cluster 2(N=306) has 2 sub-cluster at 2 (8), ICL=7<>40
cluster 2(N=306) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.48 mins(max 3: 0.1)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted