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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1072/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iSEEpathways 1.9.0  (landing page)
Kevin Rue-Albrecht
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/iSEEpathways
git_branch: devel
git_last_commit: 2f932af
git_last_commit_date: 2025-10-29 11:25:06 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for iSEEpathways on kjohnson3

To the developers/maintainers of the iSEEpathways package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iSEEpathways.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: iSEEpathways
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data iSEEpathways
StartedAt: 2025-11-12 16:33:21 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 16:34:06 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 45.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data iSEEpathways
###
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* checking for file ‘iSEEpathways/DESCRIPTION’ ... OK
* preparing ‘iSEEpathways’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘gene-ontology.Rmd’ using rmarkdown
--- finished re-building ‘gene-ontology.Rmd’

--- re-building ‘iSEEpathways.Rmd’ using rmarkdown
--- finished re-building ‘iSEEpathways.Rmd’

--- re-building ‘integration.Rmd’ using rmarkdown

Quitting from integration.Rmd:107-121 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'edgeR'
---
Backtrace:
    ▆
 1. └─base::library("edgeR")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'integration.Rmd' failed with diagnostics:
there is no package called 'edgeR'
--- failed re-building ‘integration.Rmd’

SUMMARY: processing the following file failed:
  ‘integration.Rmd’

Error: Vignette re-building failed.
Execution halted