Back to Multiple platform build/check report for BioC 3.23:   simplified   long
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This page was generated on 2026-01-05 11:34 -0500 (Mon, 05 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" 4815
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4593
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 915/2332HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graper 1.27.0  (landing page)
Britta Velten
Snapshot Date: 2026-01-04 13:40 -0500 (Sun, 04 Jan 2026)
git_url: https://git.bioconductor.org/packages/graper
git_branch: devel
git_last_commit: 95474d7
git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for graper on nebbiolo1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: graper
Version: 1.27.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
StartedAt: 2026-01-05 00:12:46 -0500 (Mon, 05 Jan 2026)
EndedAt: 2026-01-05 00:14:19 -0500 (Mon, 05 Jan 2026)
EllapsedTime: 93.1 seconds
RetCode: 0
Status:   OK  
CheckDir: graper.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2025-12-22 r89219)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.27.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-870.391
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-593.242
ELB improved by 277.149

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-534.35
ELB improved by 58.8922

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.436
ELB improved by 45.9141

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.67
ELB improved by 24.7656

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.277
ELB improved by 11.3929

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.047
ELB improved by 6.23062

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.012
ELB improved by 5.0344

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.153
ELB improved by 4.85948

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.196
ELB improved by 4.95719

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.236
ELB improved by 4.95982

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.67
ELB improved by 4.56587

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.908
ELB improved by 3.76219

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.04
ELB improved by 2.86778

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.87
ELB improved by 2.1697

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.223
ELB improved by 1.64725

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.058
ELB improved by 1.1652

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.265
ELB improved by 0.79274

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.689
ELB improved by 0.576379

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.225
ELB improved by 0.464237

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.817
ELB improved by 0.407742

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.436
ELB improved by 0.38043

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.067
ELB improved by 0.369088

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.7
ELB improved by 0.366807

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.331
ELB improved by 0.369562

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.956
ELB improved by 0.374723

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.576
ELB improved by 0.380478

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.19
ELB improved by 0.385661

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.8
ELB improved by 0.389737

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.408
ELB improved by 0.392774

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.012
ELB improved by 0.395327

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.614
ELB improved by 0.398225

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.212
ELB improved by 0.402298

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.804
ELB improved by 0.408122

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.388
ELB improved by 0.415811

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.963
ELB improved by 0.424899

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.529
ELB improved by 0.434304

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.086
ELB improved by 0.442405

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.639
ELB improved by 0.447257

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.192
ELB improved by 0.447

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.751
ELB improved by 0.440425

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.324
ELB improved by 0.427631

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.913
ELB improved by 0.410652

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.519
ELB improved by 0.394119

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.132
ELB improved by 0.386582

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.729
ELB improved by 0.403642

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.26
ELB improved by 0.469154

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.683
ELB improved by 0.576393

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.081
ELB improved by 0.602111

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.588
ELB improved by 0.492931

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.213
ELB improved by 0.374896

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.92
ELB improved by 0.293702

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.685
ELB improved by 0.234192

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.5
ELB improved by 0.18518

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.356
ELB improved by 0.144338

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.244
ELB improved by 0.111925

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.157
ELB improved by 0.0873396

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.088
ELB improved by 0.0690997

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.032
ELB improved by 0.0556763

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.986
ELB improved by 0.0458927

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.947
ELB improved by 0.0389611

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.913
ELB improved by 0.0344294

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.88
ELB improved by 0.0321759

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.848
ELB improved by 0.0325106

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.811
ELB improved by 0.0364613

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.765
ELB improved by 0.0463953

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.698
ELB improved by 0.0670897

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.592
ELB improved by 0.106318

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.422
ELB improved by 0.169229

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.185
ELB improved by 0.237084

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.925
ELB improved by 0.260672

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.7
ELB improved by 0.224742

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.531
ELB improved by 0.16886

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.408
ELB improved by 0.122602

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.32
ELB improved by 0.0885708

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.257
ELB improved by 0.0624863

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.214
ELB improved by 0.0435304

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.182
ELB improved by 0.0318274

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.156
ELB improved by 0.0259082

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.133
ELB improved by 0.0236473

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.109
ELB improved by 0.0233156

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.086
ELB improved by 0.0236425

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.062
ELB improved by 0.0235862

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.04
ELB improved by 0.02236

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.02
ELB improved by 0.0197323

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.004
ELB improved by 0.0161818

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.991
ELB improved by 0.0125608

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.982
ELB improved by 0.00953767

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-846.786
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-559.75
ELB improved by 287.036

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-495.603
ELB improved by 64.1475

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.619
ELB improved by 42.9838

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.027
ELB improved by 19.5924

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.925
ELB improved by 8.10151

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.535
ELB improved by 4.39057

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.407
ELB improved by 3.12776

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.832
ELB improved by 2.57459

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.51
ELB improved by 2.32196

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.299
ELB improved by 2.21126

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.127
ELB improved by 2.17209

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.949
ELB improved by 2.17759

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.732
ELB improved by 2.21756

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.453
ELB improved by 2.27856

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.125
ELB improved by 2.32842

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.812
ELB improved by 2.31298

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.632
ELB improved by 2.1797

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.713
ELB improved by 1.91887

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.141
ELB improved by 1.57217

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.936
ELB improved by 1.20464

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.056
ELB improved by 0.880408

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.418
ELB improved by 0.63839

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.938
ELB improved by 0.479925

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.554
ELB improved by 0.383888

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.227
ELB improved by 0.326977

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.934
ELB improved by 0.292508

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.664
ELB improved by 0.270543

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.408
ELB improved by 0.255583

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.164
ELB improved by 0.244629

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.928
ELB improved by 0.236004

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.699
ELB improved by 0.228728

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.477
ELB improved by 0.222194

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.261
ELB improved by 0.215994

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.051
ELB improved by 0.209828

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.847
ELB improved by 0.20346

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.651
ELB improved by 0.196701

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.461
ELB improved by 0.189413

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.28
ELB improved by 0.181526

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.107
ELB improved by 0.173054

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.943
ELB improved by 0.164098

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.788
ELB improved by 0.154835

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.642
ELB improved by 0.145493

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.506
ELB improved by 0.136321

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.378
ELB improved by 0.127578

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.259
ELB improved by 0.119524

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.146
ELB improved by 0.11244

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.04
ELB improved by 0.106661

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.937
ELB improved by 0.102609

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.836
ELB improved by 0.100784

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.735
ELB improved by 0.101594

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.63
ELB improved by 0.104785

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.521
ELB improved by 0.108458

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.413
ELB improved by 0.108812

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.31
ELB improved by 0.102605

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.219
ELB improved by 0.0906515

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.142
ELB improved by 0.077

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.078
ELB improved by 0.0649226

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.022
ELB improved by 0.0553499

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.974
ELB improved by 0.0478983

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.932
ELB improved by 0.0419498

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.895
ELB improved by 0.0370402

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.862
ELB improved by 0.0328827

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.833
ELB improved by 0.0293069

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.807
ELB improved by 0.0262068

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.783
ELB improved by 0.0235104

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.762
ELB improved by 0.0211647

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.743
ELB improved by 0.0191282

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.726
ELB improved by 0.0173679

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.71
ELB improved by 0.0158573

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.695
ELB improved by 0.014576

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.682
ELB improved by 0.0135089

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.669
ELB improved by 0.0126458

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.657
ELB improved by 0.0119811

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.646
ELB improved by 0.0115133

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.634
ELB improved by 0.0112441

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.623
ELB improved by 0.0111759

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.612
ELB improved by 0.0113076

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.6
ELB improved by 0.0116274

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.588
ELB improved by 0.0121004

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.576
ELB improved by 0.012654

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.562
ELB improved by 0.0131667

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.549
ELB improved by 0.0134722

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.535
ELB improved by 0.0133958

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.523
ELB improved by 0.0128201

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.511
ELB improved by 0.0117509

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.501
ELB improved by 0.0103313

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.492
ELB improved by 0.00878373

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-843.081
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-558.464
ELB improved by 284.617

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-496.365
ELB improved by 62.0982

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.689
ELB improved by 41.6768

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.813
ELB improved by 17.8762

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.551
ELB improved by 7.26196

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.01
ELB improved by 3.54078

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.934
ELB improved by 2.07605

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.531
ELB improved by 1.40241

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.476
ELB improved by 1.05566

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.601
ELB improved by 0.874687

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.819
ELB improved by 0.781749

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.083
ELB improved by 0.736132

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.367
ELB improved by 0.716406

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.655
ELB improved by 0.711382

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.94
ELB improved by 0.715421

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.214
ELB improved by 0.725887

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.472
ELB improved by 0.741595

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.711
ELB improved by 0.761724

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.926
ELB improved by 0.784986

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.117
ELB improved by 0.80905

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.286
ELB improved by 0.83029

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.442
ELB improved by 0.844098

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.596
ELB improved by 0.846029

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.763
ELB improved by 0.833691

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.954
ELB improved by 0.808306

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.18
ELB improved by 0.774547

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.441
ELB improved by 0.738866

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.733
ELB improved by 0.707682

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.048
ELB improved by 0.685568

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.374
ELB improved by 0.67339

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.706
ELB improved by 0.66785

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.043
ELB improved by 0.663324

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.388
ELB improved by 0.654781

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.749
ELB improved by 0.639682

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.131
ELB improved by 0.617573

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.543
ELB improved by 0.588435

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.99
ELB improved by 0.552568

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.478
ELB improved by 0.512288

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.006
ELB improved by 0.471769

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.571
ELB improved by 0.434592

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.169
ELB improved by 0.402442

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.793
ELB improved by 0.375561

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.44
ELB improved by 0.353497

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.104
ELB improved by 0.335538

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.783
ELB improved by 0.320919

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.474
ELB improved by 0.308924

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.175
ELB improved by 0.298971

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.885
ELB improved by 0.2907

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.601
ELB improved by 0.284095

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.321
ELB improved by 0.279638

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.043
ELB improved by 0.278428

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.761
ELB improved by 0.282009

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.47
ELB improved by 0.290938

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.169
ELB improved by 0.300654

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.871
ELB improved by 0.298168

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.598
ELB improved by 0.27313

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.363
ELB improved by 0.234595

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.163
ELB improved by 0.200145

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.985
ELB improved by 0.17847

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.815
ELB improved by 0.169902

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.645
ELB improved by 0.169687

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.477
ELB improved by 0.167626

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.325
ELB improved by 0.152675

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.2
ELB improved by 0.124484

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.107
ELB improved by 0.0933377

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.039
ELB improved by 0.0675623

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.99
ELB improved by 0.0490136

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.954
ELB improved by 0.0363835

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.926
ELB improved by 0.0279002

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.904
ELB improved by 0.0221635

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.886
ELB improved by 0.0182128

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.87
ELB improved by 0.0154218

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.857
ELB improved by 0.0133897

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.845
ELB improved by 0.0118609

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.834
ELB improved by 0.0106725

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.824
ELB improved by 0.0097198

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-851.707
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-547.013
ELB improved by 304.693

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.893
ELB improved by 65.1203

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.077
ELB improved by 38.8158

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.786
ELB improved by 15.291

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.809
ELB improved by 6.97699

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.523
ELB improved by 4.2865

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.479
ELB improved by 3.04358

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.101
ELB improved by 2.37833

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.103
ELB improved by 1.9973

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.352
ELB improved by 1.75189

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.785
ELB improved by 1.56615

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.38
ELB improved by 1.4055

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.123
ELB improved by 1.25714

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.004
ELB improved by 1.11844

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.014
ELB improved by 0.990486

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.139
ELB improved by 0.874962

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.366
ELB improved by 0.772812

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.682
ELB improved by 0.684012

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.074
ELB improved by 0.607774

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.531
ELB improved by 0.542854

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.044
ELB improved by 0.487822

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.602
ELB improved by 0.441241

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.201
ELB improved by 0.401768

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.832
ELB improved by 0.368198

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.493
ELB improved by 0.339473

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.178
ELB improved by 0.314661

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.885
ELB improved by 0.292928

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.612
ELB improved by 0.273503

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.356
ELB improved by 0.255651

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.117
ELB improved by 0.238677

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.895
ELB improved by 0.221971

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.69
ELB improved by 0.205096

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.503
ELB improved by 0.187862

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.332
ELB improved by 0.170352

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.179
ELB improved by 0.152862

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.044
ELB improved by 0.135793

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.924
ELB improved by 0.119552

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.819
ELB improved by 0.104474

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.729
ELB improved by 0.0907885

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.65
ELB improved by 0.0786153

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.582
ELB improved by 0.0679753

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.523
ELB improved by 0.0588123

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.472
ELB improved by 0.0510171

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.428
ELB improved by 0.0444496

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.389
ELB improved by 0.038957

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.354
ELB improved by 0.0343874

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.324
ELB improved by 0.0305977

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.296
ELB improved by 0.0274589

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.272
ELB improved by 0.0248585

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.249
ELB improved by 0.0226999

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.228
ELB improved by 0.0209024

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.209
ELB improved by 0.0193992

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.19
ELB improved by 0.0181355

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.173
ELB improved by 0.0170672

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.157
ELB improved by 0.0161587

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.142
ELB improved by 0.0153816

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.127
ELB improved by 0.0147131

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.113
ELB improved by 0.0141352

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.099
ELB improved by 0.0136335

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.086
ELB improved by 0.0131965

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.073
ELB improved by 0.012815

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.061
ELB improved by 0.0124816

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.049
ELB improved by 0.0121905

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.037
ELB improved by 0.0119366

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.025
ELB improved by 0.0117161

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.013
ELB improved by 0.0115257

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.002
ELB improved by 0.0113625

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.991
ELB improved by 0.0112244

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.98
ELB improved by 0.0111092

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.969
ELB improved by 0.0110154

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.958
ELB improved by 0.0109414

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.947
ELB improved by 0.010886

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.936
ELB improved by 0.0108479

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.925
ELB improved by 0.0108262

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.914
ELB improved by 0.01082

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.904
ELB improved by 0.0108283

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.893
ELB improved by 0.0108506

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.882
ELB improved by 0.0108859

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.871
ELB improved by 0.0109338

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.86
ELB improved by 0.0109936

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.849
ELB improved by 0.0110646

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.838
ELB improved by 0.0111464

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.827
ELB improved by 0.0112384

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.815
ELB improved by 0.01134

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.804
ELB improved by 0.0114509

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.792
ELB improved by 0.0115704

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.78
ELB improved by 0.011698

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.769
ELB improved by 0.0118333

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.757
ELB improved by 0.0119758

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.745
ELB improved by 0.0121249

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.732
ELB improved by 0.01228

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.72
ELB improved by 0.0124408

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.707
ELB improved by 0.0126066

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.694
ELB improved by 0.0127768

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.681
ELB improved by 0.0129509

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.668
ELB improved by 0.0131284

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.655
ELB improved by 0.0133086

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.642
ELB improved by 0.0134909

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.628
ELB improved by 0.013675

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.614
ELB improved by 0.0138601

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.6
ELB improved by 0.0140458

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.586
ELB improved by 0.0142317

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.571
ELB improved by 0.0144173

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.557
ELB improved by 0.0146023

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.542
ELB improved by 0.0147866

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.527
ELB improved by 0.0149699

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.512
ELB improved by 0.0151525

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.496
ELB improved by 0.0153343

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.481
ELB improved by 0.0155159

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.465
ELB improved by 0.0156977

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.449
ELB improved by 0.0158807

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.433
ELB improved by 0.0160658

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.417
ELB improved by 0.0162545

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.401
ELB improved by 0.0164483

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.384
ELB improved by 0.016649

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.367
ELB improved by 0.016859

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.35
ELB improved by 0.0170807

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.333
ELB improved by 0.0173169

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.315
ELB improved by 0.0175706

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.297
ELB improved by 0.0178454

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.279
ELB improved by 0.0181449

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.261
ELB improved by 0.0184729

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.242
ELB improved by 0.0188337

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.223
ELB improved by 0.0192316

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.203
ELB improved by 0.0196713

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.183
ELB improved by 0.0201576

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.162
ELB improved by 0.0206955

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.141
ELB improved by 0.0212902

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.119
ELB improved by 0.0219471

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.096
ELB improved by 0.0226716

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.073
ELB improved by 0.0234694

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.048
ELB improved by 0.0243462

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.023
ELB improved by 0.0253081

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.997
ELB improved by 0.0263609

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.969
ELB improved by 0.0275106

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.94
ELB improved by 0.0287632

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.91
ELB improved by 0.0301243

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.879
ELB improved by 0.0315995

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.845
ELB improved by 0.0331937

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.811
ELB improved by 0.0349113

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.774
ELB improved by 0.0367556

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.735
ELB improved by 0.0387287

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.694
ELB improved by 0.0408308

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.651
ELB improved by 0.0430602

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.606
ELB improved by 0.0454124

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.558
ELB improved by 0.0478798

iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.507
ELB improved by 0.0504508

iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.454
ELB improved by 0.0531098

iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.399
ELB improved by 0.0558362

iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.34
ELB improved by 0.0586039

iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.279
ELB improved by 0.0613814

iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.214
ELB improved by 0.0641312

iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.148
ELB improved by 0.06681

iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.078
ELB improved by 0.0693687

iteration 156
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.006
ELB improved by 0.0717533

iteration 157
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.933
ELB improved by 0.0739056

iteration 158
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.857
ELB improved by 0.0757644

iteration 159
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.78
ELB improved by 0.077268

iteration 160
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.701
ELB improved by 0.0783564

iteration 161
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.622
ELB improved by 0.0789748

iteration 162
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.543
ELB improved by 0.0790776

iteration 163
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.464
ELB improved by 0.0786326

iteration 164
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.387
ELB improved by 0.0776246

iteration 165
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.311
ELB improved by 0.0760587

iteration 166
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.237
ELB improved by 0.0739615

iteration 167
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.165
ELB improved by 0.0713804

iteration 168
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.097
ELB improved by 0.0683806

iteration 169
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.032
ELB improved by 0.0650413

iteration 170
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.971
ELB improved by 0.061449

iteration 171
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.913
ELB improved by 0.0576924

iteration 172
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.859
ELB improved by 0.0538566

iteration 173
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.809
ELB improved by 0.0500185

iteration 174
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.763
ELB improved by 0.0462441

iteration 175
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.72
ELB improved by 0.0425869

iteration 176
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.681
ELB improved by 0.0390876

iteration 177
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.645
ELB improved by 0.035775

iteration 178
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.613
ELB improved by 0.0326671

iteration 179
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.583
ELB improved by 0.0297732

iteration 180
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.556
ELB improved by 0.0270955

iteration 181
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.531
ELB improved by 0.0246307

iteration 182
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.509
ELB improved by 0.0223716

iteration 183
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.488
ELB improved by 0.0203081

iteration 184
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.47
ELB improved by 0.0184288

iteration 185
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.453
ELB improved by 0.016721

iteration 186
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.438
ELB improved by 0.0151719

iteration 187
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.424
ELB improved by 0.0137685

iteration 188
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.412
ELB improved by 0.0124985

iteration 189
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.401
ELB improved by 0.01135

iteration 190
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.39
ELB improved by 0.0103119

iteration 191
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.381
ELB improved by 0.00937387

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.537   0.359   2.884

Example timings

graper.Rcheck/graper-Ex.timings

nameusersystemelapsed
coef.graper0.0550.0180.075
getPIPs0.0500.0110.062
graper0.0870.0120.100
makeExampleData0.0090.0000.011
makeExampleDataWithUnequalGroups0.0130.0000.013
plotELBO0.3300.0210.353
plotGroupPenalties1.1240.0541.180
plotPosterior0.6540.0190.673
predict.graper2.0570.0692.125
print.graper0.0480.0130.060