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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 900/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
goseq 1.63.0  (landing page)
Federico Marini
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/goseq
git_branch: devel
git_last_commit: 9833b83
git_last_commit_date: 2025-10-29 10:04:46 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for goseq on kjohnson3

To the developers/maintainers of the goseq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/goseq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: goseq
Version: 1.63.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data goseq
StartedAt: 2025-11-12 16:24:26 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 16:24:47 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 21.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data goseq
###
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* checking for file ‘goseq/DESCRIPTION’ ... OK
* preparing ‘goseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘goseq.Rnw’ using Sweave
Loading required package: BiasedUrn
Loading required package: geneLenDataBase


Error: processing vignette 'goseq.Rnw' failed with diagnostics:
 chunk 6 (label = edger_1) 
Error in library(edgeR) : there is no package called ‘edgeR’

--- failed re-building ‘goseq.Rnw’

SUMMARY: processing the following file failed:
  ‘goseq.Rnw’

Error: Vignette re-building failed.
Execution halted