| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4013 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 565/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| destiny 3.25.0 (landing page) Philipp Angerer
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the destiny package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/destiny.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: destiny |
| Version: 3.25.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data destiny |
| StartedAt: 2025-11-12 16:08:28 -0500 (Wed, 12 Nov 2025) |
| EndedAt: 2025-11-12 16:09:00 -0500 (Wed, 12 Nov 2025) |
| EllapsedTime: 32.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data destiny
###
##############################################################################
##############################################################################
* checking for file ‘destiny/DESCRIPTION’ ... OK
* preparing ‘destiny’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘DPT.Rmd’ using rmarkdown
2025-11-12 16:08:50.578 R[99682:2001447] XType: Using static font registry.
--- finished re-building ‘DPT.Rmd’
--- re-building ‘Diffusion-Map-recap.Rmd’ using rmarkdown
--- finished re-building ‘Diffusion-Map-recap.Rmd’
--- re-building ‘Diffusion-Maps.Rmd’ using rmarkdown
--- finished re-building ‘Diffusion-Maps.Rmd’
--- re-building ‘Gene-Relevance.Rmd’ using rmarkdown
Quitting from Gene-Relevance.Rmd:18-25 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'scran'
---
Backtrace:
▆
1. ├─base::suppressPackageStartupMessages(library(scran))
2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
3. └─conflicted (local) library(scran)
4. └─base::library(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Gene-Relevance.Rmd' failed with diagnostics:
there is no package called 'scran'
--- failed re-building ‘Gene-Relevance.Rmd’
--- re-building ‘Global-Sigma.Rmd’ using rmarkdown
--- finished re-building ‘Global-Sigma.Rmd’
--- re-building ‘tidyverse.Rmd’ using rmarkdown
--- finished re-building ‘tidyverse.Rmd’
SUMMARY: processing the following file failed:
‘Gene-Relevance.Rmd’
Error: Vignette re-building failed.
Execution halted