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This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4957
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4686
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4627
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 528/2404HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dar 1.7.0  (landing page)
Francesc Catala-Moll
Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026)
git_url: https://git.bioconductor.org/packages/dar
git_branch: devel
git_last_commit: 6a93481
git_last_commit_date: 2025-10-29 11:27:31 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped
See other builds for dar in R Universe.

BUILD results for dar on kunpeng2

To the developers/maintainers of the dar package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dar.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: dar
Version: 1.7.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dar
StartedAt: 2026-04-16 23:10:36 -0000 (Thu, 16 Apr 2026)
EndedAt: 2026-04-16 23:17:03 -0000 (Thu, 16 Apr 2026)
EllapsedTime: 387.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dar
###
##############################################################################
##############################################################################


* checking for file ‘dar/DESCRIPTION’ ... OK
* preparing ‘dar’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘article.Rmd’ using rmarkdown

Quitting from article.Rmd:218-222 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `pm[[2]]`:
! subscript out of bounds
---
Backtrace:
     ▆
  1. ├─dar::corr_heatmap(da_results, font_size = 10)
  2. ├─dar::corr_heatmap(da_results, font_size = 10)
  3. │ └─overlap_df(rec, steps = steps, type = type) %>% ...
  4. ├─heatmaply::heatmaply_cor(...)
  5. │ ├─heatmaply::heatmaply(x, limits = limits, colors = colors, ...)
  6. │ └─heatmaply:::heatmaply.default(...)
  7. │   ├─heatmaply::heatmaply(...)
  8. │   └─heatmaply:::heatmaply.heatmapr(...)
  9. │     ├─... %>% layout(showlegend = FALSE)
 10. │     ├─plotly::ggplotly(...)
 11. │     └─plotly:::ggplotly.ggplot(...)
 12. │       └─plotly::gg2list(...)
 13. └─plotly::layout(., showlegend = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'article.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘article.Rmd’

--- re-building ‘bioinformatics_vignette.Rmd’ using rmarkdown

Quitting from bioinformatics_vignette.Rmd:145-148 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `pm[[2]]`:
! subscript out of bounds
---
Backtrace:
     ▆
  1. ├─dar::corr_heatmap(da_results, font_size = 10)
  2. ├─dar::corr_heatmap(da_results, font_size = 10)
  3. │ └─overlap_df(rec, steps = steps, type = type) %>% ...
  4. ├─heatmaply::heatmaply_cor(...)
  5. │ ├─heatmaply::heatmaply(x, limits = limits, colors = colors, ...)
  6. │ └─heatmaply:::heatmaply.default(...)
  7. │   ├─heatmaply::heatmaply(...)
  8. │   └─heatmaply:::heatmaply.heatmapr(...)
  9. │     ├─... %>% layout(showlegend = FALSE)
 10. │     ├─plotly::ggplotly(...)
 11. │     └─plotly:::ggplotly.ggplot(...)
 12. │       └─plotly::gg2list(...)
 13. └─plotly::layout(., showlegend = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'bioinformatics_vignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘bioinformatics_vignette.Rmd’

--- re-building ‘dar.Rmd’ using rmarkdown
--- finished re-building ‘dar.Rmd’

--- re-building ‘data_import.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Data Import", and the latter is "Converting Common Data Formats to Phyloseq and TreeSummarizedExperiment". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘data_import.Rmd’

--- re-building ‘filtering_subsetting.Rmd’ using rmarkdown
--- finished re-building ‘filtering_subsetting.Rmd’

--- re-building ‘import_export_recipes.Rmd’ using rmarkdown
--- finished re-building ‘import_export_recipes.Rmd’

SUMMARY: processing the following files failed:
  ‘article.Rmd’ ‘bioinformatics_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted