| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-19 10:13 -0500 (Wed, 19 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4827 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4600 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4564 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 489/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cyanoFilter 1.19.0 (landing page) Oluwafemi Olusoji
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cyanoFilter |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.19.0.tar.gz |
| StartedAt: 2025-11-18 20:24:09 -0500 (Tue, 18 Nov 2025) |
| EndedAt: 2025-11-18 20:26:10 -0500 (Tue, 18 Nov 2025) |
| EllapsedTime: 120.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cyanoFilter.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.19.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/cyanoFilter.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gateFunc 11.133 0.491 9.320
ggpairsDens 5.269 0.135 5.443
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.19.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
| name | user | system | elapsed | |
| MarginEvents | 0.863 | 0.084 | 0.960 | |
| PhytoFilter | 0.690 | 0.039 | 0.741 | |
| PhytopFilter | 0.786 | 0.050 | 0.847 | |
| accTest | 0.443 | 0.030 | 0.483 | |
| accuracy | 0.478 | 0.027 | 0.510 | |
| cellmargin | 0.357 | 0.023 | 0.384 | |
| clusterExtract | 0.904 | 0.033 | 0.947 | |
| clusterExtractp | 1.068 | 0.056 | 1.142 | |
| debrisNc | 0.578 | 0.042 | 0.631 | |
| fullFlowframe-MarginEvents-method | 0.323 | 0.021 | 0.348 | |
| fullFlowframe-PhytopFilter-method | 0.844 | 0.044 | 0.898 | |
| fullFlowframe | 0.320 | 0.022 | 0.347 | |
| gateFunc | 11.133 | 0.491 | 9.320 | |
| ggpairsDens | 5.269 | 0.135 | 5.443 | |
| ggplotDens | 0.683 | 0.026 | 0.714 | |
| ggplotDens2 | 1.278 | 0.058 | 1.350 | |
| goodfcs | 0.055 | 0.008 | 0.064 | |
| is.DebrisFilter | 0.000 | 0.000 | 0.001 | |
| is.MarginEvents | 0 | 0 | 0 | |
| is.PhytopFilter | 0.001 | 0.000 | 0.001 | |
| is.flowFrame | 0 | 0 | 0 | |
| is.flowSet | 0 | 0 | 0 | |
| lnTrans | 0.209 | 0.013 | 0.226 | |
| newFlowframe | 0.225 | 0.068 | 0.298 | |
| nona | 0.092 | 0.008 | 0.103 | |
| noneg | 0.173 | 0.012 | 0.187 | |
| oneDgate | 0.221 | 0.068 | 0.292 | |
| pairsPlot | 1.870 | 0.163 | 2.059 | |
| pigmentGate | 0.284 | 0.047 | 0.336 | |
| reducedFlowframe-MarginEvents-method | 0.334 | 0.018 | 0.355 | |
| reducedFlowframe | 0.340 | 0.019 | 0.365 | |
| retain | 0.021 | 0.002 | 0.024 | |
| rowNumbers | 0.231 | 0.043 | 0.277 | |
| summaries-DebrisFilter-method | 0.305 | 0.018 | 0.328 | |
| summaries-MarginEvents-method | 0.614 | 0.029 | 0.652 | |
| summaries-PhytopFilter-method | 0.569 | 0.035 | 0.612 | |
| summaries | 0.291 | 0.016 | 0.314 | |