| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-20 11:37 -0400 (Mon, 20 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4961 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4690 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 502/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cyanoFilter 1.19.0 (landing page) Oluwafemi Olusoji
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| See other builds for cyanoFilter in R Universe. | ||||||||||||||
|
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: cyanoFilter |
| Version: 1.19.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cyanoFilter_1.19.0.tar.gz |
| StartedAt: 2026-04-17 03:29:30 -0000 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 03:31:44 -0000 (Fri, 17 Apr 2026) |
| EllapsedTime: 134.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cyanoFilter.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cyanoFilter_1.19.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/cyanoFilter.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gateFunc 14.246 0.402 11.873
ggpairsDens 7.303 0.291 7.618
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.19.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
| name | user | system | elapsed | |
| MarginEvents | 0.984 | 0.036 | 1.028 | |
| PhytoFilter | 0.802 | 0.008 | 0.812 | |
| PhytopFilter | 1.057 | 0.080 | 1.139 | |
| accTest | 0.481 | 0.000 | 0.482 | |
| accuracy | 0.560 | 0.016 | 0.577 | |
| cellmargin | 0.387 | 0.008 | 0.395 | |
| clusterExtract | 1.087 | 0.008 | 1.098 | |
| clusterExtractp | 1.086 | 0.004 | 1.094 | |
| debrisNc | 0.431 | 0.000 | 0.432 | |
| fullFlowframe-MarginEvents-method | 0.405 | 0.024 | 0.430 | |
| fullFlowframe-PhytopFilter-method | 0.810 | 0.016 | 0.829 | |
| fullFlowframe | 0.410 | 0.000 | 0.411 | |
| gateFunc | 14.246 | 0.402 | 11.873 | |
| ggpairsDens | 7.303 | 0.291 | 7.618 | |
| ggplotDens | 0.841 | 0.036 | 0.880 | |
| ggplotDens2 | 1.438 | 0.032 | 1.474 | |
| goodfcs | 0.070 | 0.000 | 0.072 | |
| is.DebrisFilter | 0 | 0 | 0 | |
| is.MarginEvents | 0 | 0 | 0 | |
| is.PhytopFilter | 0.001 | 0.000 | 0.001 | |
| is.flowFrame | 0 | 0 | 0 | |
| is.flowSet | 0 | 0 | 0 | |
| lnTrans | 0.285 | 0.004 | 0.290 | |
| newFlowframe | 0.278 | 0.016 | 0.295 | |
| nona | 0.127 | 0.000 | 0.128 | |
| noneg | 0.23 | 0.00 | 0.23 | |
| oneDgate | 0.304 | 0.000 | 0.305 | |
| pairsPlot | 2.209 | 0.056 | 2.277 | |
| pigmentGate | 0.360 | 0.028 | 0.388 | |
| reducedFlowframe-MarginEvents-method | 0.397 | 0.032 | 0.431 | |
| reducedFlowframe | 0.406 | 0.000 | 0.415 | |
| retain | 0.018 | 0.004 | 0.023 | |
| rowNumbers | 0.286 | 0.010 | 0.298 | |
| summaries-DebrisFilter-method | 0.412 | 0.004 | 0.417 | |
| summaries-MarginEvents-method | 0.425 | 0.000 | 0.427 | |
| summaries-PhytopFilter-method | 1.162 | 0.063 | 1.230 | |
| summaries | 0.381 | 0.024 | 0.411 | |