Back to Build/check report for BioC 3.23:   simplified   long
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 249/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bsseq 1.47.1  (landing page)
Kasper Daniel Hansen
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/bsseq
git_branch: devel
git_last_commit: 46b4295
git_last_commit_date: 2025-10-31 11:03:21 -0500 (Fri, 31 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped

INSTALL results for bsseq on kjohnson3

To the developers/maintainers of the bsseq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bsseq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: bsseq
Version: 1.47.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL bsseq
StartedAt: 2025-11-12 15:29:54 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 15:29:55 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 1.1 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL bsseq
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
ERROR: dependencies ‘HDF5Array’, ‘rhdf5’ are not available for package ‘bsseq’
Perhaps try a variation of:
install.packages(c('HDF5Array', 'rhdf5'))
* removing ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/bsseq’