Eivind Valen
| Snapshot Date: 2026-05-07 13:40 -0400 (Thu, 07 May 2026) |
| git_url: https://git.bioconductor.org/packages/amplican |
| git_branch: RELEASE_3_23 |
| git_last_commit: 8323cb7 |
| git_last_commit_date: 2026-04-28 08:46:24 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-08 11:34 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4992 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4725 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 64/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| amplican 1.34.0 (landing page) Eivind Valen
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for amplican in R Universe. | ||||||||||||||
|
To the developers/maintainers of the amplican package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/amplican.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: amplican |
| Version: 1.34.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data amplican |
| StartedAt: 2026-05-07 15:39:57 -0400 (Thu, 07 May 2026) |
| EndedAt: 2026-05-07 15:40:08 -0400 (Thu, 07 May 2026) |
| EllapsedTime: 11.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data amplican ### ############################################################################## ############################################################################## * checking for file ‘amplican/DESCRIPTION’ ... OK * preparing ‘amplican’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘amplicanFAQ.Rmd’ using rmarkdown Error: processing vignette 'amplicanFAQ.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘amplicanFAQ.Rmd’ --- re-building ‘amplicanOverview.Rmd’ using rmarkdown Error: processing vignette 'amplicanOverview.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘amplicanOverview.Rmd’ --- re-building ‘example_amplicon_report.Rmd’ using rmarkdown Error: processing vignette 'example_amplicon_report.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘example_amplicon_report.Rmd’ --- re-building ‘example_barcode_report.Rmd’ using rmarkdown Error: processing vignette 'example_barcode_report.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘example_barcode_report.Rmd’ --- re-building ‘example_group_report.Rmd’ using rmarkdown Error: processing vignette 'example_group_report.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘example_group_report.Rmd’ --- re-building ‘example_guide_report.Rmd’ using rmarkdown Error: processing vignette 'example_guide_report.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘example_guide_report.Rmd’ --- re-building ‘example_id_report.Rmd’ using rmarkdown Error: processing vignette 'example_id_report.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘example_id_report.Rmd’ --- re-building ‘example_index.Rmd’ using rmarkdown Error: processing vignette 'example_index.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘example_index.Rmd’ SUMMARY: processing the following files failed: ‘amplicanFAQ.Rmd’ ‘amplicanOverview.Rmd’ ‘example_amplicon_report.Rmd’ ‘example_barcode_report.Rmd’ ‘example_group_report.Rmd’ ‘example_guide_report.Rmd’ ‘example_id_report.Rmd’ ‘example_index.Rmd’ Error: Vignette re-building failed. Execution halted