Mischa Stetketee
| Snapshot Date: 2026-01-04 13:40 -0500 (Sun, 04 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/StatescopeR |
| git_branch: devel |
| git_last_commit: 65ab001 |
| git_last_commit_date: 2025-12-24 08:04:06 -0500 (Wed, 24 Dec 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-05 11:35 -0500 (Mon, 05 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2111/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| StatescopeR 0.99.33 (landing page) Mischa Stetketee
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the StatescopeR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/StatescopeR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: StatescopeR |
| Version: 0.99.33 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data StatescopeR |
| StartedAt: 2026-01-04 17:47:22 -0500 (Sun, 04 Jan 2026) |
| EndedAt: 2026-01-04 17:48:04 -0500 (Sun, 04 Jan 2026) |
| EllapsedTime: 42.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data StatescopeR
###
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* checking for file ‘StatescopeR/DESCRIPTION’ ... OK
* preparing ‘StatescopeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘StatescopeR.Rmd’ using rmarkdown
python-build: use openssl from homebrew
python-build: use readline from homebrew
Downloading Python-3.7.17.tar.xz...
-> https://www.python.org/ftp/python/3.7.17/Python-3.7.17.tar.xz
Installing Python-3.7.17...
patching file 'Doc/library/ctypes.rst'
patching file 'Lib/test/test_unicode.py'
patching file 'Modules/_ctypes/_ctypes.c'
patching file 'Modules/_ctypes/callproc.c'
patching file 'Modules/_ctypes/ctypes.h'
patching file setup.py
patching file 'Misc/NEWS.d/next/Core and Builtins/2020-06-30-04-44-29.bpo-41100.PJwA6F.rst'
patching file 'Modules/_decimal/libmpdec/mpdecimal.h'
patching file setup.py
patching file setup.py
python-build: use tcl-tk from homebrew
python-build: use readline from homebrew
python-build: use zlib from xcode sdk
BUILD FAILED (OS X 13.7.8 using python-build 2.6.17-24-g4a3aaf4)
Inspect or clean up the working tree at /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20260104174756.59749
Results logged to /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20260104174756.59749.log
Last 10 log lines:
incomplete block on file
/usr/bin/install -c
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for --with-pydebug... no
checking for --with-assertions... no
checking for --enable-optimizations... yes
checking for --with-lto... yes
checking for llvm-ar... no
configure: error: llvm-ar is required for a --with-lto build with clang but could not be found.
make: *** No targets specified and no makefile found. Stop.
Quitting from StatescopeR.Rmd:124-153 [Prepare StatescopeR input]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! installation of Python 3.7 failed
---
Backtrace:
▆
1. └─StatescopeR::select_genes(scRNAseq, 30L, 50L, labels = scRNAseq$`cell type`)
2. └─basilisk::basiliskStart(autogenes, testload = c("autogenes"))
3. └─basilisk::obtainEnvironmentPath(env)
4. └─basilisk::setupBasiliskEnv(...)
5. ├─base::suppressMessages(install_python(version))
6. │ └─base::withCallingHandlers(...)
7. └─reticulate::install_python(version)
8. └─reticulate:::stopf("installation of Python %s failed", version)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'StatescopeR.Rmd' failed with diagnostics:
installation of Python 3.7 failed
--- failed re-building ‘StatescopeR.Rmd’
SUMMARY: processing the following file failed:
‘StatescopeR.Rmd’
Error: Vignette re-building failed.
Execution halted