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This page was generated on 2026-04-10 11:35 -0400 (Fri, 10 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4917
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" 4629
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2040/2388HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SimBu 1.13.0  (landing page)
Alexander Dietrich
Snapshot Date: 2026-04-09 13:40 -0400 (Thu, 09 Apr 2026)
git_url: https://git.bioconductor.org/packages/SimBu
git_branch: devel
git_last_commit: fc87678
git_last_commit_date: 2025-10-29 11:18:10 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for SimBu in R Universe.

BUILD results for SimBu on kjohnson3

To the developers/maintainers of the SimBu package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SimBu.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SimBu
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SimBu
StartedAt: 2026-04-09 17:10:53 -0400 (Thu, 09 Apr 2026)
EndedAt: 2026-04-09 17:11:12 -0400 (Thu, 09 Apr 2026)
EllapsedTime: 19.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SimBu
###
##############################################################################
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* checking for file ‘SimBu/DESCRIPTION’ ... OK
* preparing ‘SimBu’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘SimBu.Rmd’ using rmarkdown
Warning: stack imbalance in '<-', 65 then 67
Warning: stack imbalance in 'withVisible', 59 then 61
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Getting started", and the latter is "Getting started with SimBu". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘SimBu.Rmd’

--- re-building ‘sfaira_vignette.Rmd’ using rmarkdown
--- finished re-building ‘sfaira_vignette.Rmd’

--- re-building ‘simulator_scaling_factors.Rmd’ using rmarkdown
--- finished re-building ‘simulator_scaling_factors.Rmd’

--- re-building ‘simulator_input_output.Rmd’ using knitr

Quitting from simulator_input_output.Rmd:22-26 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'Seurat' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so, 0x0006): Symbol not found: _R_getRegisteredNamespace
  Referenced from: <D5FEE207-EB8F-3FC2-BC24-84E97E708ECA> /Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so
  Expected in:     <9885FFC9-0B1B-386C-8515-0CC182A63B5A> /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib
---
Backtrace:
    ▆
 1. └─base::library(Seurat)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'simulator_input_output.Rmd' failed with diagnostics:
package or namespace load failed for 'Seurat' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so, 0x0006): Symbol not found: _R_getRegisteredNamespace
  Referenced from: <D5FEE207-EB8F-3FC2-BC24-84E97E708ECA> /Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so
  Expected in:     <9885FFC9-0B1B-386C-8515-0CC182A63B5A> /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib
--- failed re-building ‘simulator_input_output.Rmd’

SUMMARY: processing the following file failed:
  ‘simulator_input_output.Rmd’

Error: Vignette re-building failed.
Execution halted