Multiple platform build/check report for BioC 3.23 - INSTALL results for SharedObject on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4988
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"	4718
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for SharedObject on kjohnson3

To the developers/maintainers of the SharedObject package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SharedObject.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SharedObject

Version: 1.26.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SharedObject

StartedAt: 2026-04-29 15:15:58 -0400 (Wed, 29 Apr 2026)

EndedAt: 2026-04-29 15:16:02 -0400 (Wed, 29 Apr 2026)

EllapsedTime: 4.0 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SharedObject
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
Warning: SystemRequirements specified C++11: support has been removed
* installing *source* package ‘SharedObject’ ...
** this is package ‘SharedObject’ version ‘1.26.0’
** using staged installation
checking for gcc... clang -arch arm64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to accept ISO C89... none needed
checking for shm_open in -lrt... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
specified C++11
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c C_interface.cpp -o C_interface.o
C_interface.cpp:166:9: error: use of undeclared identifier 'OBJECT'
  166 |         return OBJECT(x);
      |                ^
C_interface.cpp:171:2: error: use of undeclared identifier 'SET_OBJECT'
  171 |         SET_OBJECT(x, i);
      |         ^
C_interface.cpp:176:9: error: use of undeclared identifier 'IS_S4_OBJECT'
  176 |         return IS_S4_OBJECT(x);
      |                ^
C_interface.cpp:181:2: error: use of undeclared identifier 'SET_S4_OBJECT'
  181 |         SET_S4_OBJECT(x);
      |         ^
C_interface.cpp:186:2: error: use of undeclared identifier 'UNSET_S4_OBJECT'
  186 |         UNSET_S4_OBJECT(x);
      |         ^
5 errors generated.
make: *** [C_interface.o] Error 1
ERROR: compilation failed for package ‘SharedObject’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/SharedObject’