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This page was generated on 2026-03-25 11:34 -0400 (Wed, 25 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4876
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" 4573
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2155/2372HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
STRINGdb 2.23.0  (landing page)
Damian Szklarczyk
Snapshot Date: 2026-03-24 13:40 -0400 (Tue, 24 Mar 2026)
git_url: https://git.bioconductor.org/packages/STRINGdb
git_branch: devel
git_last_commit: d94568c
git_last_commit_date: 2025-10-29 10:16:33 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for STRINGdb in R Universe.

BUILD results for STRINGdb on nebbiolo1

To the developers/maintainers of the STRINGdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STRINGdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: STRINGdb
Version: 2.23.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb
StartedAt: 2026-03-24 20:24:22 -0400 (Tue, 24 Mar 2026)
EndedAt: 2026-03-24 20:25:54 -0400 (Tue, 24 Mar 2026)
EllapsedTime: 92.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb
###
##############################################################################
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* checking for file ‘STRINGdb/DESCRIPTION’ ... OK
* preparing ‘STRINGdb’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘STRINGdb.Rnw’ using Sweave
trying URL 'https://stringdb-downloads.org/download/protein.aliases.v12.0/9606.protein.aliases.v12.0.txt.gz'
Content type 'application/octet-stream' length 19777800 bytes (18.9 MB)
==================================================
downloaded 18.9 MB

trying URL 'https://stringdb-downloads.org/download/protein.info.v12.0/9606.protein.info.v12.0.txt.gz'
Content type 'application/octet-stream' length 1970090 bytes (1.9 MB)
==================================================
downloaded 1.9 MB


Error: processing vignette 'STRINGdb.Rnw' failed with diagnostics:
 chunk 7 (label = plot_network) 
Error in readPNG(postFormSmart(urlStr, .params = params, .ctype = "raw")) : 
  libpng error: Not a PNG file

--- failed re-building ‘STRINGdb.Rnw’

SUMMARY: processing the following file failed:
  ‘STRINGdb.Rnw’

Error: Vignette re-building failed.
Execution halted