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This page was generated on 2025-11-08 11:32 -0500 (Sat, 08 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4821 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2099/2323 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| STADyUM 1.1.0 (landing page) Rebecca Hassett
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
|
To the developers/maintainers of the STADyUM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STADyUM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: STADyUM |
| Version: 1.1.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data STADyUM |
| StartedAt: 2025-11-07 20:17:53 -0500 (Fri, 07 Nov 2025) |
| EndedAt: 2025-11-07 20:18:12 -0500 (Fri, 07 Nov 2025) |
| EllapsedTime: 19.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data STADyUM
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* checking for file ‘STADyUM/DESCRIPTION’ ... OK
* preparing ‘STADyUM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
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* installing *source* package ‘STADyUM’ ...
** this is package ‘STADyUM’ version ‘1.1.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c simPol.cpp -o simPol.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o STADyUM.so RcppExports.o simPol.o -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR
installing to /tmp/RtmprMs2Ed/Rinst1d4a3179f1d25a/00LOCK-STADyUM/00new/STADyUM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error: object ‘group_by’ is not exported by 'namespace:plyranges'
Execution halted
ERROR: lazy loading failed for package ‘STADyUM’
* removing ‘/tmp/RtmprMs2Ed/Rinst1d4a3179f1d25a/STADyUM’
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ERROR: package installation failed