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This page was generated on 2026-03-09 11:34 -0400 (Mon, 09 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4508
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" 3381
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1738/2360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-03-08 13:40 -0400 (Sun, 08 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-03-08 17:26:28 -0400 (Sun, 08 Mar 2026)
EndedAt: 2026-03-08 17:27:14 -0400 (Sun, 08 Mar 2026)
EllapsedTime: 45.8 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-02-28 r89501)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-08 21:26:28 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.392   0.238   2.183 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0000.0000.001
AA3DMoRSE0.0000.0010.001
AAACF0.0000.0010.001
AABLOSUM1000.0000.0000.001
AABLOSUM450.0000.0010.000
AABLOSUM500.0010.0000.000
AABLOSUM620.0000.0010.001
AABLOSUM800.0000.0000.001
AABurden0.0010.0010.001
AACPSA000
AAConn0.0000.0010.000
AAConst0.0010.0000.001
AADescAll0.0000.0000.001
AAEdgeAdj0.0000.0010.000
AAEigIdx0.0000.0000.001
AAFGC0.0000.0010.001
AAGETAWAY000
AAGeom0.0000.0010.000
AAInfo0.0010.0000.001
AAMOE2D0.0000.0000.001
AAMOE3D0.0000.0010.000
AAMetaInfo0.0000.0000.001
AAMolProp0.0010.0010.001
AAPAM120000
AAPAM2500.0000.0000.001
AAPAM300.0000.0010.001
AAPAM40000
AAPAM70000
AARDF0.0000.0000.001
AARandic000
AATopo0.0000.0010.001
AATopoChg0.0000.0000.001
AAWHIM000
AAWalk0.0010.0010.001
AAindex0.0000.0000.001
OptAA3d000
acc0.0030.0030.005
calcDrugFPSim000
calcDrugMCSSim0.0070.0010.009
calcParProtGOSim000
calcParProtSeqSim0.0010.0010.002
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0000.001
checkProt0.0000.0010.000
convMolFormat0.0010.0000.001
extractDrugAIO000
extractDrugALOGP0.0000.0000.001
extractDrugAminoAcidCount0.0000.0010.000
extractDrugApol0.0000.0000.001
extractDrugAromaticAtomsCount000
extractDrugAromaticBondsCount000
extractDrugAtomCount000
extractDrugAutocorrelationCharge0.0000.0010.000
extractDrugAutocorrelationMass000
extractDrugAutocorrelationPolarizability0.0010.0000.000
extractDrugBCUT0.0000.0000.001
extractDrugBPol000
extractDrugBondCount0.0000.0000.001
extractDrugCPSA000
extractDrugCarbonTypes0.0000.0000.001
extractDrugChiChain000
extractDrugChiCluster0.0010.0000.001
extractDrugChiPath000
extractDrugChiPathCluster0.0000.0000.001
extractDrugDescOB0.0020.0010.003
extractDrugECI0.0000.0010.000
extractDrugEstate0.0010.0000.000
extractDrugEstateComplete0.0000.0000.001
extractDrugExtended000
extractDrugExtendedComplete0.0000.0000.001
extractDrugFMF000
extractDrugFragmentComplexity000
extractDrugGraph0.0000.0000.001
extractDrugGraphComplete0.0010.0000.000
extractDrugGravitationalIndex0.0000.0000.001
extractDrugHBondAcceptorCount0.0000.0010.000
extractDrugHBondDonorCount000
extractDrugHybridization000
extractDrugHybridizationComplete000
extractDrugHybridizationRatio0.0000.0010.001
extractDrugIPMolecularLearning0.0010.0000.000
extractDrugKR0.0000.0000.001
extractDrugKRComplete000
extractDrugKappaShapeIndices0.0010.0010.001
extractDrugKierHallSmarts000
extractDrugLargestChain0.0000.0000.001
extractDrugLargestPiSystem000
extractDrugLengthOverBreadth0.0010.0000.000
extractDrugLongestAliphaticChain0.0000.0000.001
extractDrugMACCS000
extractDrugMACCSComplete0.0010.0010.001
extractDrugMDE000
extractDrugMannholdLogP000
extractDrugMomentOfInertia0.0000.0010.001
extractDrugOBFP20.0040.0010.006
extractDrugOBFP30.0020.0010.002
extractDrugOBFP40.0330.0020.035
extractDrugOBMACCS0.0020.0000.003
extractDrugPetitjeanNumber0.0000.0000.001
extractDrugPetitjeanShapeIndex000
extractDrugPubChem000
extractDrugPubChemComplete000
extractDrugRotatableBondsCount0.0010.0010.000
extractDrugRuleOfFive000
extractDrugShortestPath000
extractDrugShortestPathComplete000
extractDrugStandard0.0010.0000.000
extractDrugStandardComplete0.0000.0010.001
extractDrugTPSA000
extractDrugVABC0.0000.0000.001
extractDrugVAdjMa000
extractDrugWHIM000
extractDrugWeight000
extractDrugWeightedPath0.0010.0000.001
extractDrugWienerNumbers000
extractDrugXLogP0.0000.0000.001
extractDrugZagrebIndex0.0000.0010.000
extractPCMBLOSUM0.0040.0000.004
extractPCMDescScales0.0030.0010.004
extractPCMFAScales0.0070.0020.010
extractPCMMDSScales0.0030.0010.004
extractPCMPropScales0.0040.0010.004
extractPCMScales0.0050.0010.005
extractProtAAC0.0010.0000.001
extractProtAPAAC0.2480.0060.264
extractProtCTDC0.0010.0000.002
extractProtCTDD0.0020.0010.002
extractProtCTDT0.0010.0000.002
extractProtCTriad0.0280.0030.032
extractProtDC0.0010.0020.003
extractProtGeary0.0360.0040.040
extractProtMoran0.0380.0020.039
extractProtMoreauBroto0.0320.0020.034
extractProtPAAC0.1130.0020.116
extractProtPSSM0.0010.0010.001
extractProtPSSMAcc000
extractProtPSSMFeature000
extractProtQSO0.2060.0050.211
extractProtSOCN0.1970.0060.203
extractProtTC0.0090.0290.038
getCPI0.0010.0000.001
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0010.001
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank0.0000.0010.000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA000
readMolFromSDF0.0010.0000.001
readMolFromSmi0.0000.0010.001
readPDB0.2390.0020.241
searchDrug0.0010.0000.001
segProt0.0000.0010.001