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This page was generated on 2026-03-31 11:33 -0400 (Tue, 31 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.6.0 alpha (2026-03-30 r89742) 4606
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-03-28 r89739) 4534
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1747/2374HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-03-30 13:40 -0400 (Mon, 30 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-03-30 21:14:49 -0400 (Mon, 30 Mar 2026)
EndedAt: 2026-03-30 21:15:41 -0400 (Mon, 30 Mar 2026)
EllapsedTime: 51.6 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R version 4.6.0 alpha (2026-03-28 r89739)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-03-31 01:14:49 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R version 4.6.0 alpha (2026-03-28 r89739)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.722   0.266   2.408 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE0.0000.0000.001
AAACF000
AABLOSUM100000
AABLOSUM450.0000.0010.001
AABLOSUM500.0000.0000.001
AABLOSUM620.0000.0010.001
AABLOSUM80000
AABurden0.0000.0010.000
AACPSA000
AAConn0.0000.0010.000
AAConst0.0000.0000.001
AADescAll0.0000.0010.001
AAEdgeAdj000
AAEigIdx000
AAFGC000
AAGETAWAY0.0000.0000.001
AAGeom0.0000.0000.001
AAInfo0.0000.0000.001
AAMOE2D0.0000.0000.001
AAMOE3D000
AAMetaInfo0.0000.0010.000
AAMolProp0.0000.0000.001
AAPAM1200.0000.0000.001
AAPAM250000
AAPAM30000
AAPAM400.0000.0010.001
AAPAM700.0000.0000.001
AARDF0.0010.0010.000
AARandic000
AATopo0.0000.0010.001
AATopoChg0.0010.0000.001
AAWHIM0.0000.0010.001
AAWalk0.0000.0000.001
AAindex0.0010.0000.000
OptAA3d000
acc0.0030.0020.005
calcDrugFPSim000
calcDrugMCSSim0.0070.0010.009
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.004
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0000.001
checkProt0.0000.0010.000
convMolFormat0.0010.0000.001
extractDrugAIO0.0000.0000.001
extractDrugALOGP000
extractDrugAminoAcidCount0.0010.0000.000
extractDrugApol0.0000.0000.001
extractDrugAromaticAtomsCount000
extractDrugAromaticBondsCount0.0000.0000.001
extractDrugAtomCount000
extractDrugAutocorrelationCharge000
extractDrugAutocorrelationMass0.0000.0000.001
extractDrugAutocorrelationPolarizability000
extractDrugBCUT0.0010.0000.000
extractDrugBPol0.0000.0000.001
extractDrugBondCount000
extractDrugCPSA0.0010.0010.000
extractDrugCarbonTypes0.0000.0000.001
extractDrugChiChain000
extractDrugChiCluster0.0010.0000.000
extractDrugChiPath0.0000.0010.001
extractDrugChiPathCluster000
extractDrugDescOB0.0020.0010.004
extractDrugECI0.0010.0000.000
extractDrugEstate000
extractDrugEstateComplete0.0000.0010.001
extractDrugExtended0.0010.0000.000
extractDrugExtendedComplete000
extractDrugFMF0.0000.0000.001
extractDrugFragmentComplexity000
extractDrugGraph000
extractDrugGraphComplete0.0010.0000.001
extractDrugGravitationalIndex000
extractDrugHBondAcceptorCount000
extractDrugHBondDonorCount0.0010.0000.001
extractDrugHybridization000
extractDrugHybridizationComplete0.0000.0010.000
extractDrugHybridizationRatio0.0010.0000.001
extractDrugIPMolecularLearning000
extractDrugKR000
extractDrugKRComplete0.0010.0010.001
extractDrugKappaShapeIndices000
extractDrugKierHallSmarts0.0000.0000.001
extractDrugLargestChain000
extractDrugLargestPiSystem0.0000.0010.000
extractDrugLengthOverBreadth0.0000.0000.001
extractDrugLongestAliphaticChain000
extractDrugMACCS000
extractDrugMACCSComplete0.0000.0000.001
extractDrugMDE000
extractDrugMannholdLogP000
extractDrugMomentOfInertia0.0000.0000.001
extractDrugOBFP20.0040.0000.005
extractDrugOBFP30.0010.0010.002
extractDrugOBFP40.0380.0010.040
extractDrugOBMACCS0.0020.0010.003
extractDrugPetitjeanNumber000
extractDrugPetitjeanShapeIndex0.0010.0000.000
extractDrugPubChem0.0000.0000.001
extractDrugPubChemComplete000
extractDrugRotatableBondsCount000
extractDrugRuleOfFive0.0000.0000.001
extractDrugShortestPath0.0010.0000.000
extractDrugShortestPathComplete000
extractDrugStandard000
extractDrugStandardComplete0.0010.0000.000
extractDrugTPSA0.0000.0000.001
extractDrugVABC000
extractDrugVAdjMa0.0010.0000.001
extractDrugWHIM000
extractDrugWeight000
extractDrugWeightedPath0.0010.0000.001
extractDrugWienerNumbers000
extractDrugXLogP000
extractDrugZagrebIndex0.0010.0000.001
extractPCMBLOSUM0.0040.0010.005
extractPCMDescScales0.0040.0000.004
extractPCMFAScales0.0080.0020.010
extractPCMMDSScales0.0030.0010.004
extractPCMPropScales0.0040.0010.005
extractPCMScales0.0050.0010.006
extractProtAAC0.0000.0000.001
extractProtAPAAC0.2540.0090.273
extractProtCTDC0.0010.0000.001
extractProtCTDD0.0020.0010.002
extractProtCTDT0.0020.0000.002
extractProtCTriad0.0290.0020.031
extractProtDC0.0010.0010.003
extractProtGeary0.0380.0020.040
extractProtMoran0.0420.0050.047
extractProtMoreauBroto0.0360.0030.039
extractProtPAAC0.1210.0010.123
extractProtPSSM000
extractProtPSSMAcc000
extractProtPSSMFeature000
extractProtQSO0.2140.0020.216
extractProtSOCN0.2060.0010.208
extractProtTC0.0090.0330.042
getCPI0.0000.0000.002
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank0.0000.0000.001
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0000.0010.001
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0010.0000.001
readMolFromSDF0.0000.0010.001
readMolFromSmi0.0000.0000.001
readPDB0.2460.0010.247
searchDrug0.0000.0000.001
segProt0.0010.0010.001