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This page was generated on 2026-01-24 11:35 -0500 (Sat, 24 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4811
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1726/2345HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-01-23 13:40 -0500 (Fri, 23 Jan 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-01-23 21:49:33 -0500 (Fri, 23 Jan 2026)
EndedAt: 2026-01-23 21:50:31 -0500 (Fri, 23 Jan 2026)
EllapsedTime: 57.9 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.814   0.228   2.650 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE0.0000.0000.001
AAACF0.0010.0000.001
AABLOSUM1000.0000.0010.001
AABLOSUM450.0000.0010.001
AABLOSUM500.0010.0010.001
AABLOSUM62000
AABLOSUM800.0000.0010.002
AABurden0.0010.0000.001
AACPSA000
AAConn0.0000.0010.000
AAConst000
AADescAll0.0000.0010.000
AAEdgeAdj0.0000.0000.001
AAEigIdx0.0000.0010.001
AAFGC0.0000.0010.001
AAGETAWAY0.0000.0010.001
AAGeom0.0000.0000.002
AAInfo0.0000.0000.001
AAMOE2D0.0000.0010.000
AAMOE3D000
AAMetaInfo0.0010.0010.001
AAMolProp0.0000.0000.001
AAPAM1200.0000.0010.001
AAPAM250000
AAPAM300.0000.0010.000
AAPAM400.0000.0010.002
AAPAM700.0000.0000.001
AARDF0.0000.0010.000
AARandic000
AATopo0.0000.0010.001
AATopoChg0.0000.0000.001
AAWHIM0.0010.0000.001
AAWalk0.0000.0010.000
AAindex0.0000.0000.001
OptAA3d000
acc0.0020.0020.005
calcDrugFPSim000
calcDrugMCSSim0.0070.0010.009
calcParProtGOSim0.0000.0000.001
calcParProtSeqSim0.0020.0010.003
calcTwoProtGOSim000
calcTwoProtSeqSim0.0000.0000.001
checkProt0.0010.0010.001
convMolFormat000
extractDrugAIO0.0000.0000.001
extractDrugALOGP0.0010.0000.000
extractDrugAminoAcidCount0.0000.0000.001
extractDrugApol0.0000.0000.001
extractDrugAromaticAtomsCount0.0010.0000.000
extractDrugAromaticBondsCount000
extractDrugAtomCount0.0000.0000.001
extractDrugAutocorrelationCharge0.0010.0000.000
extractDrugAutocorrelationMass0.0000.0010.001
extractDrugAutocorrelationPolarizability000
extractDrugBCUT0.0010.0000.000
extractDrugBPol000
extractDrugBondCount0.0000.0010.000
extractDrugCPSA000
extractDrugCarbonTypes000
extractDrugChiChain0.0000.0000.001
extractDrugChiCluster0.0000.0010.000
extractDrugChiPath0.0010.0000.001
extractDrugChiPathCluster000
extractDrugDescOB0.0020.0010.005
extractDrugECI0.0000.0000.001
extractDrugEstate0.0000.0010.000
extractDrugEstateComplete0.0000.0000.001
extractDrugExtended000
extractDrugExtendedComplete000
extractDrugFMF000
extractDrugFragmentComplexity000
extractDrugGraph0.0000.0000.001
extractDrugGraphComplete0.0010.0010.000
extractDrugGravitationalIndex000
extractDrugHBondAcceptorCount000
extractDrugHBondDonorCount000
extractDrugHybridization0.0000.0010.001
extractDrugHybridizationComplete000
extractDrugHybridizationRatio0.0000.0000.001
extractDrugIPMolecularLearning0.0000.0010.000
extractDrugKR000
extractDrugKRComplete0.0000.0000.001
extractDrugKappaShapeIndices0.0010.0000.000
extractDrugKierHallSmarts0.0000.0000.001
extractDrugLargestChain000
extractDrugLargestPiSystem000
extractDrugLengthOverBreadth0.0000.0010.001
extractDrugLongestAliphaticChain000
extractDrugMACCS0.0000.0000.001
extractDrugMACCSComplete0.0010.0000.000
extractDrugMDE0.0000.0000.001
extractDrugMannholdLogP000
extractDrugMomentOfInertia0.0010.0000.001
extractDrugOBFP20.0040.0020.006
extractDrugOBFP30.0020.0010.003
extractDrugOBFP40.0400.0020.042
extractDrugOBMACCS0.0020.0010.003
extractDrugPetitjeanNumber0.0010.0000.000
extractDrugPetitjeanShapeIndex0.0000.0000.001
extractDrugPubChem0.0000.0010.000
extractDrugPubChemComplete0.0010.0000.000
extractDrugRotatableBondsCount0.0000.0000.001
extractDrugRuleOfFive0.0000.0010.000
extractDrugShortestPath0.0000.0000.001
extractDrugShortestPathComplete000
extractDrugStandard0.0000.0000.001
extractDrugStandardComplete000
extractDrugTPSA0.0010.0000.001
extractDrugVABC000
extractDrugVAdjMa000
extractDrugWHIM000
extractDrugWeight000
extractDrugWeightedPath0.0000.0000.001
extractDrugWienerNumbers000
extractDrugXLogP0.0010.0010.001
extractDrugZagrebIndex000
extractPCMBLOSUM0.0030.0010.010
extractPCMDescScales0.0030.0000.004
extractPCMFAScales0.0100.0030.017
extractPCMMDSScales0.0030.0010.004
extractPCMPropScales0.0040.0000.004
extractPCMScales0.0060.0010.007
extractProtAAC0.0000.0000.001
extractProtAPAAC0.2730.0070.288
extractProtCTDC0.0020.0000.002
extractProtCTDD0.0020.0010.002
extractProtCTDT0.0010.0010.002
extractProtCTriad0.0330.0040.039
extractProtDC0.0020.0040.006
extractProtGeary0.0480.0050.057
extractProtMoran0.0420.0050.046
extractProtMoreauBroto0.0400.0050.045
extractProtPAAC0.1330.0030.138
extractProtPSSM0.0000.0000.001
extractProtPSSMAcc0.0000.0000.001
extractProtPSSMFeature0.0000.0000.001
extractProtQSO0.2220.0050.237
extractProtSOCN0.2120.0050.237
extractProtTC0.0100.0450.059
getCPI0.0010.0010.001
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt0.0000.0010.000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0010.001
getProt0.0000.0000.001
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL0.0000.0000.001
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0010.0010.000
readMolFromSDF000
readMolFromSmi0.0010.0000.000
readPDB0.2700.0020.286
searchDrug0.0000.0000.001
segProt0.0010.0000.001