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This page was generated on 2026-03-20 11:34 -0400 (Fri, 20 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4862
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" 4064
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1709/2368HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RadioGx 2.15.0  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2026-03-19 13:40 -0400 (Thu, 19 Mar 2026)
git_url: https://git.bioconductor.org/packages/RadioGx
git_branch: devel
git_last_commit: 3cfa0fd
git_last_commit_date: 2025-10-29 11:00:09 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for RadioGx in R Universe.


CHECK results for RadioGx on kjohnson3

To the developers/maintainers of the RadioGx package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RadioGx.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RadioGx
Version: 2.15.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RadioGx_2.15.0.tar.gz
StartedAt: 2026-03-19 19:55:25 -0400 (Thu, 19 Mar 2026)
EndedAt: 2026-03-19 19:57:16 -0400 (Thu, 19 Mar 2026)
EllapsedTime: 111.4 seconds
RetCode: 0
Status:   OK  
CheckDir: RadioGx.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RadioGx_2.15.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/RadioGx.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-19 23:55:25 UTC
* using option ‘--no-vignettes’
* checking for file ‘RadioGx/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RadioGx’ version ‘2.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RadioGx’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RadioGx.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RadioGx
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘RadioGx’ ...
** this is package ‘RadioGx’ version ‘2.15.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RadioGx)

Tests output


Example timings

RadioGx.Rcheck/RadioGx-Ex.timings

nameusersystemelapsed
RadioSet-accessors0.6600.0700.736
availableRSets0.0000.0010.001
checkRSetStructure0.1620.0040.168
computeAUC0.0010.0000.001
computeD10000
computeSF20.0000.0010.000
dim-RadioSet-method0.4990.0040.534
doseResponseCurve0.0240.0010.027
downloadRSet000
linearQuadraticModel0.0010.0000.000
plotCurve0.0050.0000.006
radSensitivitySig0.2280.0150.257
show-RadioSet-method0.1360.0020.140
show-RadioSig-method0.2130.0140.250
showSigAnnot-RadioSig-method0.1900.0120.210
sub-RadioSet-ANY-ANY-ANY-method0.2030.0060.215
subsetTo-RadioSet-method0.0280.0010.029
summarizeMolecularProfiles-RadioSet-method0.1900.0040.196
summarizeSensitivityProfiles-RadioSet-method0.1710.0020.176