| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-01-21 11:35 -0500 (Wed, 21 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4805 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4539 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1812/2343 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RNAseqCovarImpute 1.9.0 (landing page) Brennan Baker
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the RNAseqCovarImpute package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAseqCovarImpute.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RNAseqCovarImpute |
| Version: 1.9.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAseqCovarImpute |
| StartedAt: 2026-01-20 17:25:43 -0500 (Tue, 20 Jan 2026) |
| EndedAt: 2026-01-20 17:25:50 -0500 (Tue, 20 Jan 2026) |
| EllapsedTime: 7.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAseqCovarImpute
###
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* checking for file ‘RNAseqCovarImpute/DESCRIPTION’ ... OK
* preparing ‘RNAseqCovarImpute’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Example_Data_for_RNAseqCovarImpute.Rmd’ using rmarkdown
Loading required namespace: stringr
--- finished re-building ‘Example_Data_for_RNAseqCovarImpute.Rmd’
--- re-building ‘Impute_Covariate_Data_in_RNA_sequencing_Studies.Rmd’ using rmarkdown
Quitting from Impute_Covariate_Data_in_RNA_sequencing_Studies.Rmd:48-57 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'PCAtools'
---
Backtrace:
▆
1. └─base::library(PCAtools)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Impute_Covariate_Data_in_RNA_sequencing_Studies.Rmd' failed with diagnostics:
there is no package called 'PCAtools'
--- failed re-building ‘Impute_Covariate_Data_in_RNA_sequencing_Studies.Rmd’
SUMMARY: processing the following file failed:
‘Impute_Covariate_Data_in_RNA_sequencing_Studies.Rmd’
Error: Vignette re-building failed.
Execution halted