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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
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Package 1782/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RLassoCox 1.19.0  (landing page)
Wei Liu
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/RLassoCox
git_branch: devel
git_last_commit: 3312604
git_last_commit_date: 2025-10-29 11:04:52 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  YES


CHECK results for RLassoCox on kjohnson3

To the developers/maintainers of the RLassoCox package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RLassoCox.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RLassoCox
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RLassoCox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RLassoCox_1.19.0.tar.gz
StartedAt: 2025-11-12 20:09:11 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 20:11:01 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 110.4 seconds
RetCode: 0
Status:   OK  
CheckDir: RLassoCox.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RLassoCox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RLassoCox_1.19.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/RLassoCox.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RLassoCox/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RLassoCox’ version ‘1.19.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RLassoCox’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
RLassoCox-package   17.775  8.215  27.219
predict.cvRLassoCox 10.240  4.697  15.948
cvRLassoCox          9.748  4.472  15.504
RLassoCox            7.599  4.393  13.058
predict.RLassoCox    7.496  4.266  13.000
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RLassoCox.Rcheck/00install.out

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RLassoCox
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘RLassoCox’ ...
** this is package ‘RLassoCox’ version ‘1.19.0’
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RLassoCox)

Tests output


Example timings

RLassoCox.Rcheck/RLassoCox-Ex.timings

nameusersystemelapsed
RLassoCox-package17.775 8.21527.219
RLassoCox 7.599 4.39313.058
cvRLassoCox 9.748 4.47215.504
dGMMirGraph0.0110.0010.011
mRNA_matrix0.0080.0020.010
predict.RLassoCox 7.496 4.26613.000
predict.cvRLassoCox10.240 4.69715.948
survData0.0000.0010.001