| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-08 11:33 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4992 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4725 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1524/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OGRE 1.16.0 (landing page) Sven Berres
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for OGRE in R Universe. | ||||||||||||||
|
To the developers/maintainers of the OGRE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OGRE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OGRE |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OGRE |
| StartedAt: 2026-05-07 19:16:03 -0400 (Thu, 07 May 2026) |
| EndedAt: 2026-05-07 19:17:16 -0400 (Thu, 07 May 2026) |
| EllapsedTime: 73.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OGRE
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* checking for file ‘OGRE/DESCRIPTION’ ... OK
* preparing ‘OGRE’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘OGRE.Rmd’ using rmarkdown
Quitting from OGRE.Rmd:128-131 [gvizPlot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! SSL connect error [genome.ucsc.edu]:
OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to genome.ucsc.edu:443
---
Backtrace:
▆
1. ├─OGRE::gvizPlot(...)
2. │ └─Gviz::IdeogramTrack(genome = "hg38", chromosome = chr)
3. │ └─methods::new(...)
4. │ ├─methods::initialize(value, ...)
5. │ └─Gviz::initialize(value, ...)
6. │ └─Gviz (local) .local(.Object, ...)
7. │ └─Gviz:::.cacheGenomes(genome = genome)
8. │ ├─Gviz::.doCache(...)
9. │ │ ├─BiocGenerics::eval(expression, envir = callEnv)
10. │ │ └─base::eval(expression, envir = callEnv)
11. │ │ └─base::eval(expression, envir = callEnv)
12. │ ├─Gviz::.doCache(...)
13. │ │ ├─BiocGenerics::eval(expression, envir = callEnv)
14. │ │ └─base::eval(expression, envir = callEnv)
15. │ │ └─base::eval(expression, envir = callEnv)
16. │ ├─rtracklayer::browserSession()
17. │ └─rtracklayer::browserSession()
18. │ ├─rtracklayer::browserSession("UCSC", ...)
19. │ └─rtracklayer::browserSession("UCSC", ...)
20. │ └─methods::new(class, ...)
21. │ ├─methods::initialize(value, ...)
22. │ └─rtracklayer::initialize(value, ...)
23. │ └─rtracklayer (local) .local(.Object, ...)
24. │ └─httr::GET(gwURL, config)
25. │ └─httr:::request_perform(req, hu$handle$handle)
26. │ ├─httr:::request_fetch(req$output, req$url, handle)
27. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
28. │ └─curl::curl_fetch_memory(url, handle = handle)
29. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'OGRE.Rmd' failed with diagnostics:
SSL connect error [genome.ucsc.edu]:
OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to genome.ucsc.edu:443
--- failed re-building ‘OGRE.Rmd’
SUMMARY: processing the following file failed:
‘OGRE.Rmd’
Error: Vignette re-building failed.
Execution halted