| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4013 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1395/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MultiDataSet 1.39.0 (landing page) Xavier Escribà Montagut
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the MultiDataSet package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiDataSet.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MultiDataSet |
| Version: 1.39.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MultiDataSet |
| StartedAt: 2025-11-12 16:48:12 -0500 (Wed, 12 Nov 2025) |
| EndedAt: 2025-11-12 16:48:31 -0500 (Wed, 12 Nov 2025) |
| EllapsedTime: 18.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MultiDataSet
###
##############################################################################
##############################################################################
* checking for file ‘MultiDataSet/DESCRIPTION’ ... OK
* preparing ‘MultiDataSet’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MultiDataSet.Rmd’ using rmarkdown
Failed with error: 'there is no package called 'minfi''
Quitting from MultiDataSet.Rmd:130-136 [add_rse overwrite]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.requirePackage()`:
! unable to load required package 'minfi'
---
Backtrace:
▆
1. └─brge_methy[1:100, ]
2. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
3. └─methods:::.findInheritedMethods(classes, fdef, mtable)
4. └─methods::getClass(cl1, where = where, .Force = TRUE)
5. └─methods::getClassDef(Class, where)
6. └─methods:::.requirePackage(package)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MultiDataSet.Rmd' failed with diagnostics:
unable to load required package 'minfi'
--- failed re-building ‘MultiDataSet.Rmd’
--- re-building ‘MultiDataSet_Extending_Proteome.Rmd’ using rmarkdown
--- finished re-building ‘MultiDataSet_Extending_Proteome.Rmd’
SUMMARY: processing the following file failed:
‘MultiDataSet.Rmd’
Error: Vignette re-building failed.
Execution halted