Matthias Munz
| Snapshot Date: 2026-04-09 13:40 -0400 (Thu, 09 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/MouseFM |
| git_branch: devel |
| git_last_commit: 6cd9eac |
| git_last_commit_date: 2026-03-22 12:16:45 -0400 (Sun, 22 Mar 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-10 11:35 -0400 (Fri, 10 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4917 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" | 4629 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1383/2388 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MouseFM 1.21.1 (landing page) Matthias Munz
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| See other builds for MouseFM in R Universe. | ||||||||||||||
|
To the developers/maintainers of the MouseFM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MouseFM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MouseFM |
| Version: 1.21.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MouseFM |
| StartedAt: 2026-04-09 18:59:40 -0400 (Thu, 09 Apr 2026) |
| EndedAt: 2026-04-09 19:00:04 -0400 (Thu, 09 Apr 2026) |
| EllapsedTime: 24.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MouseFM
###
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* checking for file ‘MouseFM/DESCRIPTION’ ... OK
* preparing ‘MouseFM’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘fetch.Rmd’ using rmarkdown
Quitting from fetch.Rmd:38-42 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Failure when receiving data from the peer [45.85.146.64]:
Recv failure: Connection reset by peer
---
Backtrace:
▆
1. ├─MouseFM::fetch("chr1", start = 5000000, end = 6000000)
2. │ └─base::lapply(...)
3. │ └─MouseFM (local) FUN(X[[i]], ...)
4. │ └─MouseFM:::backend_request(q)
5. │ └─httr::GET(q)
6. │ └─httr:::request_perform(req, hu$handle$handle)
7. │ ├─httr:::request_fetch(req$output, req$url, handle)
8. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
9. │ └─curl::curl_fetch_memory(url, handle = handle)
10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fetch.Rmd' failed with diagnostics:
Failure when receiving data from the peer [45.85.146.64]:
Recv failure: Connection reset by peer
--- failed re-building ‘fetch.Rmd’
--- re-building ‘finemap.Rmd’ using rmarkdown
Quitting from finemap.Rmd:44-51 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Couldn't connect to server [45.85.146.64]:
Failed to connect to 45.85.146.64 port 9000 after 97 ms: Couldn't connect to server
---
Backtrace:
▆
1. ├─MouseFM::finemap(...)
2. │ └─base::lapply(...)
3. │ └─MouseFM (local) FUN(X[[i]], ...)
4. │ └─MouseFM:::backend_request(q)
5. │ └─httr::GET(q)
6. │ └─httr:::request_perform(req, hu$handle$handle)
7. │ ├─httr:::request_fetch(req$output, req$url, handle)
8. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
9. │ └─curl::curl_fetch_memory(url, handle = handle)
10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'finemap.Rmd' failed with diagnostics:
Couldn't connect to server [45.85.146.64]:
Failed to connect to 45.85.146.64 port 9000 after 97 ms: Couldn't connect to server
--- failed re-building ‘finemap.Rmd’
--- re-building ‘prio.Rmd’ using rmarkdown
Quitting from prio.Rmd:43-45 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Couldn't connect to server [45.85.146.64]:
Failed to connect to 45.85.146.64 port 9000 after 96 ms: Couldn't connect to server
---
Backtrace:
▆
1. ├─MouseFM::prio(...)
2. │ └─base::lapply(...)
3. │ └─MouseFM (local) FUN(X[[i]], ...)
4. │ └─MouseFM:::backend_request(q)
5. │ └─httr::GET(q)
6. │ └─httr:::request_perform(req, hu$handle$handle)
7. │ ├─httr:::request_fetch(req$output, req$url, handle)
8. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
9. │ └─curl::curl_fetch_memory(url, handle = handle)
10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'prio.Rmd' failed with diagnostics:
Couldn't connect to server [45.85.146.64]:
Failed to connect to 45.85.146.64 port 9000 after 96 ms: Couldn't connect to server
--- failed re-building ‘prio.Rmd’
SUMMARY: processing the following files failed:
‘fetch.Rmd’ ‘finemap.Rmd’ ‘prio.Rmd’
Error: Vignette re-building failed.
Execution halted