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This page was generated on 2025-12-29 11:35 -0500 (Mon, 29 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4807 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1339/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Moonlight2R 1.9.1 (landing page) Matteo Tiberti
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the Moonlight2R package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Moonlight2R.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Moonlight2R |
| Version: 1.9.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Moonlight2R |
| StartedAt: 2025-12-28 17:01:17 -0500 (Sun, 28 Dec 2025) |
| EndedAt: 2025-12-28 17:02:14 -0500 (Sun, 28 Dec 2025) |
| EllapsedTime: 56.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Moonlight2R
###
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* checking for file ‘Moonlight2R/DESCRIPTION’ ... OK
* preparing ‘Moonlight2R’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Moonlight2R.Rmd’ using rmarkdown
Quitting from Moonlight2R.Rmd:738-758 [unnamed-chunk-20]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Empty reply from server
---
Backtrace:
▆
1. ├─Moonlight2R::GMA(...)
2. │ └─EpiMix::EpiMix(...)
3. │ └─EpiMix:::getRoadMapEnhancerProbes(...)
4. │ └─RCurl::getURL(K27Ac_url)
5. │ └─RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
6. └─RCurl (local) `<fn>`(52L, "Empty reply from server", TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Moonlight2R.Rmd' failed with diagnostics:
Empty reply from server
--- failed re-building ‘Moonlight2R.Rmd’
SUMMARY: processing the following file failed:
‘Moonlight2R.Rmd’
Error: Vignette re-building failed.
Execution halted