Multiple platform build/check report for BioC 3.23 - BUILD results for MetMashR on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4869
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4576
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BUILD results for MetMashR on kjohnson3

To the developers/maintainers of the MetMashR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MetMashR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MetMashR

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR

StartedAt: 2025-12-07 16:56:40 -0500 (Sun, 07 Dec 2025)

EndedAt: 2025-12-07 16:58:35 -0500 (Sun, 07 Dec 2025)

EllapsedTime: 115.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR
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* checking for file ‘MetMashR/DESCRIPTION’ ... OK
* preparing ‘MetMashR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Extending_MetMashR.Rmd’ using rmarkdown
--- finished re-building ‘Extending_MetMashR.Rmd’

--- re-building ‘annotate_mixtures.Rmd’ using rmarkdown
2025-12-07 16:58:02.036 R[25252:303758878] XType: Using static font registry.
--- finished re-building ‘annotate_mixtures.Rmd’

--- re-building ‘exploring_mtox.Rmd’ using rmarkdown
--- finished re-building ‘exploring_mtox.Rmd’

--- re-building ‘using_MetMashR.Rmd’ using rmarkdown

Quitting from using_MetMashR.Rmd:394-433 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.submit_api_query()`:
! 'getURL()' failed:
  URL: https://www.lipidmaps.org/rest/compound/abbrev/AcCa%2814%3A0%29/inchi_key/json
  error: Service Unavailable (HTTP 503).
---
Backtrace:
    ▆
 1. ├─struct::model_apply(WF, AT)
 2. └─MetMashR::model_apply(WF, AT)
 3.   └─MetMashR (local) .local(M, D, ...)
 4.     ├─struct::model_apply(M[i], D)
 5.     └─MetMashR::model_apply(M[i], D)
 6.       └─MetMashR (local) .local(M, D, ...)
 7.         └─MetMashR:::.submit_api_query(URL = u, FUN = .submit_fun, params = param_list(M))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using_MetMashR.Rmd' failed with diagnostics:
'getURL()' failed:
  URL: https://www.lipidmaps.org/rest/compound/abbrev/AcCa%2814%3A0%29/inchi_key/json
  error: Service Unavailable (HTTP 503).
--- failed re-building ‘using_MetMashR.Rmd’

SUMMARY: processing the following file failed:
  ‘using_MetMashR.Rmd’

Error: Vignette re-building failed.
Execution halted