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This page was generated on 2025-10-23 11:30 -0400 (Thu, 23 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 3809
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1172/2355HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MADSEQ 1.35.1  (landing page)
Yu Kong
Snapshot Date: 2025-10-22 15:48 -0400 (Wed, 22 Oct 2025)
git_url: https://git.bioconductor.org/packages/MADSEQ
git_branch: devel
git_last_commit: dbdc7a6
git_last_commit_date: 2025-07-07 12:29:00 -0400 (Mon, 07 Jul 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for MADSEQ on nebbiolo1

To the developers/maintainers of the MADSEQ package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MADSEQ.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MADSEQ
Version: 1.35.1
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MADSEQ
StartedAt: 2025-10-22 23:29:42 -0000 (Wed, 22 Oct 2025)
EndedAt: 2025-10-22 23:29:43 -0000 (Wed, 22 Oct 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MADSEQ
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* checking for file ‘MADSEQ/DESCRIPTION’ ... OK
* preparing ‘MADSEQ’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
ERROR: dependencies ‘BSgenome.Hsapiens.UCSC.hg19’, ‘zlibbioc’ are not available for package ‘MADSEQ’
Perhaps try a variation of:
install.packages(c('BSgenome.Hsapiens.UCSC.hg19', 'zlibbioc'))
* removing ‘/tmp/RtmppNrkFE/Rinst129c5f5abe6169/MADSEQ’
      -----------------------------------
ERROR: package installation failed