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This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4957
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4686
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4627
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 823/2404HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeDi 1.7.1  (landing page)
Annekathrin Nedwed
Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026)
git_url: https://git.bioconductor.org/packages/GeDi
git_branch: devel
git_last_commit: 896db86
git_last_commit_date: 2025-11-26 10:21:02 -0400 (Wed, 26 Nov 2025)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    ERROR    OK  
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped
See other builds for GeDi in R Universe.

BUILD results for GeDi on kunpeng2

To the developers/maintainers of the GeDi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeDi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: GeDi
Version: 1.7.1
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeDi
StartedAt: 2026-04-16 23:41:38 -0000 (Thu, 16 Apr 2026)
EndedAt: 2026-04-16 23:42:51 -0000 (Thu, 16 Apr 2026)
EllapsedTime: 73.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeDi
###
##############################################################################
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* checking for file ‘GeDi/DESCRIPTION’ ... OK
* preparing ‘GeDi’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GeDi_manual.Rmd’ using rmarkdown

Quitting from GeDi_manual.Rmd:263-278 [create_resenrich1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'mosdef'
---
Backtrace:
    ▆
 1. └─base::library("mosdef")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GeDi_manual.Rmd' failed with diagnostics:
there is no package called 'mosdef'
--- failed re-building ‘GeDi_manual.Rmd’

SUMMARY: processing the following file failed:
  ‘GeDi_manual.Rmd’

Error: Vignette re-building failed.
Execution halted