Robert Castelo
| Snapshot Date: 2026-05-07 13:40 -0400 (Thu, 07 May 2026) |
| git_url: https://git.bioconductor.org/packages/GSVA |
| git_branch: RELEASE_3_23 |
| git_last_commit: 61a21b0 |
| git_last_commit_date: 2026-05-05 06:36:22 -0400 (Tue, 05 May 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-08 11:34 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4992 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4725 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 967/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GSVA 2.6.1 (landing page) Robert Castelo
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for GSVA in R Universe. | ||||||||||||||
|
To the developers/maintainers of the GSVA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSVA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GSVA |
| Version: 2.6.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA |
| StartedAt: 2026-05-07 16:01:50 -0400 (Thu, 07 May 2026) |
| EndedAt: 2026-05-07 16:02:08 -0400 (Thu, 07 May 2026) |
| EllapsedTime: 18.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA ### ############################################################################## ############################################################################## * checking for file ‘GSVA/DESCRIPTION’ ... OK * preparing ‘GSVA’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘GSVA.Rmd’ using rmarkdown Error: processing vignette 'GSVA.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘GSVA.Rmd’ --- re-building ‘GSVA_proteomics.Rmd’ using rmarkdown Error: processing vignette 'GSVA_proteomics.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘GSVA_proteomics.Rmd’ --- re-building ‘GSVA_scRNAseq.Rmd’ using rmarkdown Error: processing vignette 'GSVA_scRNAseq.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘GSVA_scRNAseq.Rmd’ SUMMARY: processing the following files failed: ‘GSVA.Rmd’ ‘GSVA_proteomics.Rmd’ ‘GSVA_scRNAseq.Rmd’ Error: Vignette re-building failed. Execution halted