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This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4866
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" 4545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 733/2368HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FEAST 1.19.0  (landing page)
Kenong Su
Snapshot Date: 2026-03-20 13:40 -0400 (Fri, 20 Mar 2026)
git_url: https://git.bioconductor.org/packages/FEAST
git_branch: devel
git_last_commit: 56aecc5
git_last_commit_date: 2025-10-29 11:08:37 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    ERROR  
See other builds for FEAST in R Universe.

BUILD BIN results for FEAST on kjohnson3

To the developers/maintainers of the FEAST package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FEAST.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: FEAST
Version: 1.19.0
Command: rm -rf FEAST.buildbin-libdir && mkdir FEAST.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FEAST_1.19.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R FEAST.buildbin-libdir
StartedAt: 2026-03-21 02:26:57 -0400 (Sat, 21 Mar 2026)
EndedAt: 2026-03-21 02:27:14 -0400 (Sat, 21 Mar 2026)
EllapsedTime: 17.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   rm -rf FEAST.buildbin-libdir && mkdir FEAST.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FEAST_1.19.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R FEAST.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FEAST.buildbin-libdir FEAST_1.19.0.tar.gz'
>>>>>>> 

* installing *source* package ‘FEAST’ ...
** this is package ‘FEAST’ version ‘1.19.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c cal_3_metrics.c -o cal_3_metrics.o
cal_3_metrics.c:42:22: warning: variable 'ni_2' set but not used [-Wunused-but-set-variable]
   42 |     double *nc, *nr, ni_2, n_j2, nt, nij_2;
      |                      ^
cal_3_metrics.c:42:28: warning: variable 'n_j2' set but not used [-Wunused-but-set-variable]
   42 |     double *nc, *nr, ni_2, n_j2, nt, nij_2;
      |                            ^
cal_3_metrics.c:42:34: warning: variable 'nt' set but not used [-Wunused-but-set-variable]
   42 |     double *nc, *nr, ni_2, n_j2, nt, nij_2;
      |                                  ^
cal_3_metrics.c:42:38: warning: variable 'nij_2' set but not used [-Wunused-but-set-variable]
   42 |     double *nc, *nr, ni_2, n_j2, nt, nij_2;
      |                                      ^
4 warnings generated.
clang -arch arm64 -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o FEAST.so cal_3_metrics.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Users/biocbuild/bbs-3.23-bioc/meat/FEAST.buildbin-libdir/00LOCK-FEAST/00new/FEAST/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FEAST)


>>>>>>> 
>>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR FEAST.buildbin-libdir/FEAST/libs/FEAST.so
>>>>>>> 

>>>>>>> Paths before fix:
FEAST.buildbin-libdir/FEAST/libs/FEAST.so:
	FEAST.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0)

>>>>>>> Fix with install_name_tool:
ERROR: R installation problem: File /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/lib/libR.dylib not found!